Amber Developers Archive Apr 2011: by subject

[AMBER-Developers] [AMBER] compile errors with AmberTools1.5 + Amber11
- Jason Swails (Fri Apr 29 2011 - 13:28:27 PDT)
[AMBER-Developers] [AMBER] pmemd.cuda crashes due to "Inconsistent hydrogen network"
- Jason Swails (Fri Apr 15 2011 - 11:05:00 PDT)
- David A Case (Fri Apr 15 2011 - 10:42:55 PDT)
[AMBER-Developers] alternates to sleap (plus new sleap bug)
- Jason Swails (Fri Apr 29 2011 - 10:12:39 PDT)
- B. Lachele Foley (Fri Apr 29 2011 - 07:50:34 PDT)
- Wei Zhang (Fri Apr 29 2011 - 06:59:10 PDT)
- MengJuei Hsieh (Thu Apr 28 2011 - 22:13:42 PDT)
- MengJuei Hsieh (Thu Apr 28 2011 - 22:08:02 PDT)
- Jason Swails (Thu Apr 28 2011 - 18:43:29 PDT)
- B. Lachele Foley (Thu Apr 28 2011 - 14:47:06 PDT)
[AMBER-Developers] AMBERHOME and configure
- Jason Swails (Fri Apr 08 2011 - 09:10:46 PDT)
[AMBER-Developers] AmberTools 1.5 first bug
- Jason Swails (Fri Apr 15 2011 - 17:49:51 PDT)
- Jason Swails (Fri Apr 15 2011 - 17:43:20 PDT)
[AMBER-Developers] AT 1.5 RC Sleap, Rism, and pbsa test failures under Cygwin
- Mengjuei Hsieh (Thu Apr 14 2011 - 14:12:24 PDT)
- Tyler Luchko (Wed Apr 13 2011 - 15:03:27 PDT)
- Daniel Roe (Wed Apr 13 2011 - 09:13:13 PDT)
[AMBER-Developers] AT1.5 5apr11
- Jason Swails (Fri Apr 08 2011 - 08:46:27 PDT)
- Jason Swails (Fri Apr 08 2011 - 07:47:13 PDT)
- Ben Roberts (Fri Apr 08 2011 - 04:55:09 PDT)
- B. Lachele Foley (Fri Apr 08 2011 - 04:26:52 PDT)
- Jason Swails (Thu Apr 07 2011 - 21:33:40 PDT)
- Jason Swails (Thu Apr 07 2011 - 21:22:10 PDT)
- B. Lachele Foley (Thu Apr 07 2011 - 21:03:25 PDT)
- Thomas Cheatham (Thu Apr 07 2011 - 20:54:42 PDT)
- Jason Swails (Thu Apr 07 2011 - 20:27:12 PDT)
- David Case (Thu Apr 07 2011 - 19:26:41 PDT)
- Jason Swails (Thu Apr 07 2011 - 17:03:20 PDT)
- Thomas Cheatham III (Thu Apr 07 2011 - 16:10:58 PDT)
- Jason Swails (Thu Apr 07 2011 - 15:59:45 PDT)
- Thomas Cheatham III (Thu Apr 07 2011 - 15:22:02 PDT)
- Thomas Cheatham III (Thu Apr 07 2011 - 15:18:34 PDT)
- Jason Swails (Thu Apr 07 2011 - 14:57:58 PDT)
- Thomas Cheatham III (Thu Apr 07 2011 - 14:48:26 PDT)
- David A Case (Thu Apr 07 2011 - 11:52:02 PDT)
- Jason Swails (Thu Apr 07 2011 - 09:51:47 PDT)
- David A Case (Thu Apr 07 2011 - 09:31:46 PDT)
[AMBER-Developers] Bound copies of the 1.5 Users' Manual are now available
- Thorsten M Woelfle (Thu Apr 28 2011 - 00:58:15 PDT)
- Jason Swails (Wed Apr 27 2011 - 17:41:49 PDT)
- David A. Case (Wed Apr 27 2011 - 17:38:20 PDT)
- Gustavo Seabra (Wed Apr 27 2011 - 08:14:56 PDT)
- Jason Swails (Wed Apr 27 2011 - 07:20:02 PDT)
- Thorsten M Woelfle (Wed Apr 27 2011 - 05:28:55 PDT)
- David A. Case (Wed Apr 27 2011 - 05:04:16 PDT)
- Thorsten M Woelfle (Wed Apr 27 2011 - 04:00:19 PDT)
- case (Fri Apr 22 2011 - 18:55:09 PDT)
[AMBER-Developers] Dealing with compiler warnings, etc.
- Jason Swails (Thu Apr 07 2011 - 08:07:39 PDT)
- David A Case (Thu Apr 07 2011 - 06:18:26 PDT)
- Ben Roberts (Wed Apr 06 2011 - 20:02:47 PDT)
- case (Wed Apr 06 2011 - 19:57:56 PDT)
- MengJuei Hsieh (Wed Apr 06 2011 - 15:50:37 PDT)
- Jason Swails (Fri Apr 01 2011 - 21:25:34 PDT)
- MengJuei Hsieh (Fri Apr 01 2011 - 20:10:32 PDT)
[AMBER-Developers] file docs: was variable 1-4 scaling
- Ross Walker (Wed Apr 06 2011 - 10:46:55 PDT)
- B. Lachele Foley (Wed Apr 06 2011 - 10:43:46 PDT)
[AMBER-Developers] files.h
- Jason Swails (Tue Apr 12 2011 - 10:43:10 PDT)
[AMBER-Developers] final (!?!) release candidate for AmberTools1.5
- David A Case (Tue Apr 12 2011 - 12:09:22 PDT)
- Martin Peters (Tue Apr 12 2011 - 10:17:07 PDT)
- Daniel Roe (Tue Apr 12 2011 - 10:19:13 PDT)
- Ben Roberts (Tue Apr 12 2011 - 10:10:59 PDT)
- Jason Swails (Tue Apr 12 2011 - 10:04:02 PDT)
- Daniel Roe (Tue Apr 12 2011 - 09:57:30 PDT)
- Jason Swails (Tue Apr 12 2011 - 08:42:24 PDT)
- Daniel Roe (Tue Apr 12 2011 - 08:36:17 PDT)
- Jason Swails (Sun Apr 10 2011 - 22:11:56 PDT)
- case (Sun Apr 10 2011 - 10:59:18 PDT)
[AMBER-Developers] Final call for contributions to AmberTools 1.5
- David A Case (Tue Apr 05 2011 - 06:49:21 PDT)
[AMBER-Developers] followup on sander.RISM build failure
- Mark Williamson (Fri Apr 15 2011 - 01:22:11 PDT)
- Jason Swails (Fri Apr 15 2011 - 00:10:48 PDT)
[AMBER-Developers] force field naming
- Jason Swails (Thu Apr 28 2011 - 17:01:01 PDT)
- Ray Luo, Ph.D. (Thu Apr 28 2011 - 14:51:59 PDT)
- Ray Luo, Ph.D. (Thu Apr 28 2011 - 14:50:25 PDT)
- David A. Case (Thu Apr 28 2011 - 14:44:11 PDT)
- Carlos Simmerling (Thu Apr 28 2011 - 13:26:08 PDT)
- dcerutti.rci.rutgers.edu (Thu Apr 28 2011 - 13:22:41 PDT)
- Daniel Roe (Thu Apr 28 2011 - 13:11:18 PDT)
- Carlos Simmerling (Thu Apr 28 2011 - 13:03:41 PDT)
- Thomas Cheatham III (Thu Apr 28 2011 - 12:58:51 PDT)
- Carlos Simmerling (Thu Apr 28 2011 - 12:45:48 PDT)
[AMBER-Developers] Fwd: [CVS-notification] [GIT] git repository for AMBER:
- Jason Swails (Thu Apr 14 2011 - 10:22:51 PDT)
[AMBER-Developers] Fwd: [CVS-notification] [GIT] git repository for AMBER: eliminate a pause statement
- Mengjuei Hsieh (Sat Apr 09 2011 - 10:26:19 PDT)
- Jason Swails (Sat Apr 09 2011 - 09:58:05 PDT)
[AMBER-Developers] Gfortran 4.1 with master branch
- Mengjuei Hsieh (Sat Apr 30 2011 - 01:36:01 PDT)
- David A. Case (Fri Apr 29 2011 - 16:21:28 PDT)
- MengJuei Hsieh (Fri Apr 29 2011 - 15:02:24 PDT)
- B. Lachele Foley (Fri Apr 29 2011 - 14:09:56 PDT)
- MengJuei Hsieh (Fri Apr 29 2011 - 13:47:30 PDT)
[AMBER-Developers] how to test the AmberTools rc
- Martin Peters (Wed Apr 13 2011 - 03:00:10 PDT)
- Jason Swails (Tue Apr 12 2011 - 19:24:10 PDT)
- Jason Swails (Tue Apr 12 2011 - 18:59:38 PDT)
- case (Tue Apr 12 2011 - 18:16:57 PDT)
- case (Tue Apr 12 2011 - 18:12:34 PDT)
[AMBER-Developers] multi-pmemd
- Carlos Simmerling (Fri Apr 08 2011 - 09:04:45 PDT)
- Ross Walker (Fri Apr 08 2011 - 09:02:47 PDT)
- Carlos Simmerling (Fri Apr 08 2011 - 07:49:34 PDT)
- Jason Swails (Fri Apr 08 2011 - 07:44:45 PDT)
- Adrian Roitberg (Fri Apr 08 2011 - 06:39:57 PDT)
- Sally Pias (Fri Apr 08 2011 - 06:31:31 PDT)
- Adrian Roitberg (Fri Apr 08 2011 - 03:43:07 PDT)
- Jason Swails (Thu Apr 07 2011 - 08:21:35 PDT)
- Ross Walker (Thu Apr 07 2011 - 08:01:58 PDT)
- Carlos Simmerling (Thu Apr 07 2011 - 07:11:48 PDT)
- Ross Walker (Thu Apr 07 2011 - 07:06:15 PDT)
- David A Case (Thu Apr 07 2011 - 06:35:18 PDT)
[AMBER-Developers] new thermostat
- Carlos Simmerling (Fri Apr 01 2011 - 14:37:49 PDT)
- Adrian Roitberg (Fri Apr 01 2011 - 14:35:55 PDT)
- David A Case (Fri Apr 01 2011 - 12:49:57 PDT)
- dcerutti.rci.rutgers.edu (Fri Apr 01 2011 - 12:37:54 PDT)
- David A Case (Fri Apr 01 2011 - 05:13:01 PDT)
[AMBER-Developers] Parameter to calculate the density
- Jason Swails (Fri Apr 29 2011 - 12:54:55 PDT)
- Jun Wang (Fri Apr 29 2011 - 12:03:56 PDT)
[AMBER-Developers] printing out the actual set of force field parameters assigned to a molecule
- Piotr Cieplak (Mon Apr 25 2011 - 12:16:29 PDT)
- Jason Swails (Mon Apr 25 2011 - 11:51:31 PDT)
- Piotr Cieplak (Mon Apr 25 2011 - 11:36:43 PDT)
[AMBER-Developers] problems with QM/MM energy conservation
- Andreas Goetz (Tue Apr 05 2011 - 13:02:23 PDT)
- Ross Walker (Tue Apr 05 2011 - 08:13:54 PDT)
- David A Case (Tue Apr 05 2011 - 07:21:35 PDT)
[AMBER-Developers] Problems with sleap and iwrap
- Jodi Ann Hadden (Fri Apr 08 2011 - 16:23:00 PDT)
- Thomas Cheatham III (Fri Apr 08 2011 - 14:02:19 PDT)
- Thomas Cheatham III (Fri Apr 08 2011 - 13:46:35 PDT)
- Ross Walker (Fri Apr 08 2011 - 12:57:17 PDT)
- Wei Zhang (Fri Apr 08 2011 - 12:31:18 PDT)
- Ross Walker (Fri Apr 08 2011 - 12:12:22 PDT)
- B. Lachele Foley (Fri Apr 08 2011 - 12:09:26 PDT)
- Wei Zhang (Fri Apr 08 2011 - 12:04:49 PDT)
- Ross Walker (Fri Apr 08 2011 - 11:52:56 PDT)
- B. Lachele Foley (Fri Apr 08 2011 - 11:30:20 PDT)
- Wei Zhang (Fri Apr 08 2011 - 11:17:29 PDT)
- B. Lachele Foley (Fri Apr 08 2011 - 10:59:47 PDT)
- Jason Swails (Fri Apr 08 2011 - 10:54:23 PDT)
- B. Lachele Foley (Fri Apr 08 2011 - 10:42:29 PDT)
- Jason Swails (Fri Apr 08 2011 - 10:26:29 PDT)
- Ross Walker (Fri Apr 08 2011 - 09:58:59 PDT)
[AMBER-Developers] recommended compilers for MacOSX
- Thorsten M Woelfle (Mon Apr 25 2011 - 10:37:59 PDT)
- Mengjuei Hsieh (Mon Apr 25 2011 - 09:47:13 PDT)
- Thorsten M Woelfle (Mon Apr 25 2011 - 05:52:17 PDT)
- Mengjuei Hsieh (Sun Apr 24 2011 - 16:46:27 PDT)
- David A. Case (Sun Apr 24 2011 - 14:10:13 PDT)
- Mengjuei Hsieh (Sat Apr 23 2011 - 13:44:44 PDT)
- Romain M. Wolf (Wed Apr 20 2011 - 07:17:48 PDT)
- Thorsten M Woelfle (Tue Apr 19 2011 - 16:43:56 PDT)
- Thorsten M Woelfle (Tue Apr 19 2011 - 15:03:19 PDT)
- Jason Swails (Tue Apr 19 2011 - 14:29:04 PDT)
- Mengjuei Hsieh (Tue Apr 19 2011 - 14:12:08 PDT)
- David A Case (Tue Apr 19 2011 - 13:03:52 PDT)
[AMBER-Developers] Release of AmberTools version 1.5
- Tyler Luchko (Tue Apr 19 2011 - 12:59:43 PDT)
- Jason Swails (Thu Apr 14 2011 - 09:59:27 PDT)
- Tyler Luchko (Thu Apr 14 2011 - 09:54:50 PDT)
- Ben Roberts (Thu Apr 14 2011 - 09:29:19 PDT)
- Jason Swails (Thu Apr 14 2011 - 09:22:51 PDT)
- David A Case (Thu Apr 14 2011 - 09:10:54 PDT)
[AMBER-Developers] Removal of -gpu option in AMBER Git Tree
- Ross Walker (Fri Apr 08 2011 - 10:03:14 PDT)
[AMBER-Developers] sleap bug repro
- Wei Zhang (Mon Apr 11 2011 - 21:11:03 PDT)
- Ross Walker (Mon Apr 11 2011 - 16:56:26 PDT)
- Mark Williamson (Mon Apr 11 2011 - 16:13:10 PDT)
- B. Lachele Foley (Mon Apr 11 2011 - 15:48:21 PDT)
- Jason Swails (Mon Apr 11 2011 - 15:40:21 PDT)
[AMBER-Developers] Spelling in Manual
- Ross Walker (Sat Apr 02 2011 - 21:42:31 PDT)
- Josh Berryman (Sat Apr 02 2011 - 02:38:05 PDT)
- Jason Swails (Fri Apr 01 2011 - 13:51:09 PDT)
- Carlos Simmerling (Fri Apr 01 2011 - 13:34:47 PDT)
- Ross Walker (Fri Apr 01 2011 - 13:30:39 PDT)
- Jason Swails (Fri Apr 01 2011 - 13:26:45 PDT)
- B. Lachele Foley (Fri Apr 01 2011 - 13:21:57 PDT)
[AMBER-Developers] SQM building problem.
- Mengjuei Hsieh (Fri Apr 29 2011 - 23:37:00 PDT)
- MengJuei Hsieh (Fri Apr 29 2011 - 15:48:20 PDT)
[AMBER-Developers] Third release candidate for AmberTools 1.5
- David A Case (Fri Apr 01 2011 - 05:25:34 PDT)
[AMBER-Developers] Tzy-hwa K Tzeng is out of the office.
- Tzy-hwa K Tzeng (Tue Apr 05 2011 - 09:12:49 PDT)
[AMBER-Developers] variable 1-4 scaling
- Ross Walker (Wed Apr 06 2011 - 10:25:43 PDT)
- Jason Swails (Wed Apr 06 2011 - 10:19:53 PDT)
- Jason Swails (Wed Apr 06 2011 - 10:11:21 PDT)
- B. Lachele Foley (Wed Apr 06 2011 - 10:09:35 PDT)
- dcerutti.rci.rutgers.edu (Wed Apr 06 2011 - 09:58:43 PDT)
- David A Case (Wed Apr 06 2011 - 04:54:25 PDT)
- Jason Swails (Tue Apr 05 2011 - 17:42:01 PDT)

Amber Developers Archive Apr 2011 by subject