Here's the error message I was getting:
o ncsu-umbrella.o ncsu-utils.o ncsu-value.o mt19937.o
/home/swails/newamber/current/intel/master/amber/lib/libnetcdf.a \
-L/home/swails/newamber/current/intel/master/amber/lib
/home/swails/newamber/current/intel/master/amber/lib/arpack.a
-Wl,--start-group
/opt/intel/Compiler/11.1/069/mkl/lib/em64t/libmkl_intel_lp64.a
/opt/intel/Compiler/11.1/069/mkl/lib/em64t/libmkl_sequential.a
/opt/intel/Compiler/11.1/069/mkl/lib/em64t/libmkl_core.a -Wl,--end-group
-lpthread -lsvml -shared-intel
/home/swails/newamber/current/intel/master/amber/lib/librism_mpi.a(rism3d_c.o):
In function `rism3d_c_mp_reallocbox_':
_rism3d_c.f:(.text+0x79c9): undefined reference to
`rfftwnd_f77_mpi_destroy_plan_'
_rism3d_c.f:(.text+0x79da): undefined reference to
`rfftwnd_f77_mpi_destroy_plan_'
/home/swails/newamber/current/intel/master/amber/lib/librism_mpi.a(rism3d_c.o):
In function `rism3d_c_mp_rism3d_destroy_':
_rism3d_c.f:(.text+0x1ae35): undefined reference to
`rfftwnd_f77_mpi_destroy_plan_'
_rism3d_c.f:(.text+0x1ae46): undefined reference to
`rfftwnd_f77_mpi_destroy_plan_'
/home/swails/newamber/current/intel/master/amber/lib/librism_mpi.a(rism_fft.o):
In function `rism_fft_mp_fftw_make_plans_':
_rism_fft.f:(.text+0x58): undefined reference to
`rfftw3d_f77_mpi_create_plan_'
_rism_fft.f:(.text+0x80): undefined reference to
`rfftw3d_f77_mpi_create_plan_'
_rism_fft.f:(.text+0x9f): undefined reference to
`rfftwnd_f77_mpi_local_sizes_'
/home/swails/newamber/current/intel/master/amber/lib/librism_mpi.a(rism_fft.o):
In function `rism_fft_mp_rlft3i_':
_rism_fft.f:(.text+0x14eb): undefined reference to `rfftwnd_f77_mpi_'
_rism_fft.f:(.text+0x1b8e): undefined reference to `rfftwnd_f77_mpi_'
make[1]: *** [sander.RISM.MPI] Error 1
make[1]: Leaving directory
`/home/swails/newamber/current/intel/master/amber/src/sander'
make: *** [parallel] Error 2
I think I've seen this before. This is following a parallel build in
AmberTools/src, and I ran make clean between serial and parallel builds. I
wasn't getting this the last time we had an RC. Any ideas?
Thanks,
Jason
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Fri Apr 15 2011 - 00:30:02 PDT
