Re: [AMBER-Developers] sander to AmberTools

From: Andreas Goetz <agoetz.sdsc.edu>
Date: Tue, 25 Feb 2014 12:19:26 -0800

Hi all,

configure fails during the NetCDF build on OSX 10.6.8 with Macports gcc47 4.7.3 which used to work a week ago or so.

I filed this as Bug 261 on bugzilla - I'm not sure what the standard way of assigning people is, it is currently assigned to Scott Brozell. Please have a look if you think you can resolve this. Thanks.

All the best,
Andy

--
Dr. Andreas W. Goetz
Assistant Project Scientist
San Diego Supercomputer Center
Tel  : +1-858-822-4771
Email: agoetz.sdsc.edu
Web  : www.awgoetz.de
On Feb 20, 2014, at 6:25 PM, Jason Swails wrote:
> Hello again,
> 
> The major moves are done.  The sander, addles, amgauss, sebomd, emil,
> nmode, and nmr_aux source directories have all been moved from the
> $AMBERHOME/src directory to $AMBERHOME/AmberTools/src.  The necessary
> configure scripts, depend scripts/files, Makefiles, and header include
> paths have been updated where necessary such that everything compiles on my
> Mac, Linux/Intel, and Linux/GNU machines.
> 
> The migration is not fully complete -- the test suites need to be
> appropriately updated -- but I am done moving files around.  I strongly
> encourage everybody to pull the latest commits and merge into any active
> branches that you still use.  And, of course, please report any problems
> you have building and/or testing the current master branch.  I tried my
> best to make sure I caught everything that could be a problem, but I can't
> guarantee I did.
> 
> Thanks!
> Jason
> 
> On Thu, Feb 20, 2014 at 9:07 AM, Jason Swails <jason.swails.gmail.com>wrote:
> 
>> Hi everyone,
>> 
>> One of the main goals during the code freeze will be migrating sander to
>> AmberTools as discussed at the meeting.  This will require moving the
>> sander source directory -- as well as related programs like addles,
>> nmr_aux, and nmode -- into AmberTools/src.  I will be starting that this
>> afternoon.  I'm not sure how well git will be able to merge commits made
>> to the existing sander source code after the code is moved.  If you have
>> any dangling commits to the sander source code you want me to add to a
>> specific branch before I start let me know ASAP (I plan to start ca.
>> 1:00 EST).
>> 
>> Any 'big' patches (i.e., not a simple bugfix) that you want in the
>> master branch needs to go through Dave for approval.
>> 
>> Thanks!
>> Jason
>> 
>> --
>> Jason M. Swails
>> BioMaPS,
>> Rutgers University
>> Postdoctoral Researcher
>> 
>> 
> 
> 
> -- 
> Jason M. Swails
> BioMaPS,
> Rutgers University
> Postdoctoral Researcher
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Received on Tue Feb 25 2014 - 12:30:08 PST
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