Hello,
It builds for me now (gcc + cuda 8.0).
Gerald.
On 03/10/2017 07:34 PM, Ray Luo wrote:
> Gerald,
>
> After I "git add" these files by force, looks like they are in. Could
> you check whether you can see these files?
>
> I'm compiling a "git clean -xfd"-ed version.
>
> Ray
> --
> Ray Luo, Ph.D.
> Professor of Structural Biology/Biochemistry/Biophysics,
> Chemical Physics, Biomedical Engineering, and Chemical Engineering
> Department of Molecular Biology and Biochemistry
> University of California, Irvine, CA 92697-3900
>
>
> On Fri, Mar 10, 2017 at 8:30 AM, Gerald Monard
> <Gerald.Monard.univ-lorraine.fr> wrote:
>> Hello,
>>
>> When I compare the "original" (=downloaded) version of
>> cusplibrary-0.5.1, I can see the following files missing in the amber
>> git tree:
>> ./build
>> ./build/build-env.py
>> ./build/g++.py
>> ./build/nvcc.py
>> ./cusp
>> ./cusp/detail
>> ./cusp/detail/config.h
>>
>> All the best,
>>
>> Gerald.
>>
>> On 03/10/2017 02:39 PM, Jason Swails wrote:
>>> On Fri, Mar 10, 2017 at 8:12 AM, Daniel Roe <daniel.r.roe.gmail.com> wrote:
>>>
>>>> As of commit 372e01050807ea56cfe36e8164a4f8b4d59b9d1b, still broken. Same
>>>> error.
>>>>
>>>> ```
>>>> /usr/local/cuda-7.5/bin/nvcc -gencode arch=compute_20,code=sm_20
>>>> -gencode arch=compute_30,code=sm_30 -gencode
>>>> arch=compute_50,code=sm_50 -gencode arch=compute_52,code=sm_52
>>>> -gencode arch=compute_53,code=sm_53 -use_fast_math -O3 -ccbin g++
>>>> -I../cusplibrary-0.5.1 -o cuda_cg_wrapper.o -c cuda_cg_wrapper.cu
>>>> -DCUSP -DPCG -DJacobi -DDIA
>>>> In file included from cuda_cg_wrapper.cu:832:0:
>>>> ../cusplibrary-0.5.1/cusp/csr_matrix.h:23:32: fatal error:
>>>> cusp/detail/config.h: No such file or directory
>>>> #include <cusp/detail/config.h>
>>>> ```
>>>
>>>
>>>> File is indeed missing:
>>>>
>>>> ```
>>>> $ cd $AMBERHOME/AmberTools/src/pbsa
>>>> $ ls ../cusplibrary-0.5.1/cusp/detail/config.h
>>>> ls: cannot access ../cusplibrary-0.5.1/cusp/detail/config.h: No such
>>>> file or directory
>>>> ```
>>>
>>>
>>>> There is no config.h anywhere in the cusp directory. Have you tested
>>>> by pulling a fresh copy into a new directory and then attempting to
>>>> configure/install? Am I the only one seeing this?
>>>>
>>>
>>> config.h is in .gitignore (since we don't want to track *our* config.h).
>>> This is preventing Ray from adding it and "git status" from finding it.
>>>
>>> I've fixed this so it should ignore *only* the config.h files that our
>>> configure script generates..
>>>
>>> .Ray, try adding it again. And after you do, please try a fresh clone and
>>> build (which would have caught this missing file) and make sure that works
>>> first.
>>>
>>> All the best,
>>> Jason
>>>
>>
>> --
>> ____________________________________________________________________________
>>
>> Prof. Gerald MONARD
>> Directeur du mésocentre EXPLOR
>> Université de Lorraine
>> Boulevard des Aiguillettes B.P. 70239
>> F-54506 Vandoeuvre-les-Nancy, FRANCE
>>
>> e-mail : Gerald.Monard.univ-lorraine.fr
>> phone : +33 (0)372.745.279
>> web : http://www.monard.info
>>
>> ____________________________________________________________________________
>>
>>
>> _______________________________________________
>> AMBER-Developers mailing list
>> AMBER-Developers.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber-developers
>
> _______________________________________________
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--
____________________________________________________________________________
Prof. Gerald MONARD
Directeur du mésocentre EXPLOR
Université de Lorraine
Boulevard des Aiguillettes B.P. 70239
F-54506 Vandoeuvre-les-Nancy, FRANCE
e-mail : Gerald.Monard.univ-lorraine.fr
phone : +33 (0)372.745.279
web : http://www.monard.info
____________________________________________________________________________
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Received on Fri Mar 10 2017 - 12:00:03 PST
