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-- Ray Luo, Ph.D. Professor of Structural Biology/Biochemistry/Biophysics, Chemical Physics, Biomedical Engineering, and Chemical Engineering Department of Molecular Biology and Biochemistry University of California, Irvine, CA 92697-3900 On Fri, Mar 10, 2017 at 8:30 AM, Gerald Monard <Gerald.Monard.univ-lorraine.fr> wrote: > Hello, > > When I compare the "original" (=downloaded) version of > cusplibrary-0.5.1, I can see the following files missing in the amber > git tree: > ./build > ./build/build-env.py > ./build/g++.py > ./build/nvcc.py > ./cusp > ./cusp/detail > ./cusp/detail/config.h > > All the best, > > Gerald. > > On 03/10/2017 02:39 PM, Jason Swails wrote: >> On Fri, Mar 10, 2017 at 8:12 AM, Daniel Roe <daniel.r.roe.gmail.com> wrote: >> >>> As of commit 372e01050807ea56cfe36e8164a4f8b4d59b9d1b, still broken. Same >>> error. >>> >>> ``` >>> /usr/local/cuda-7.5/bin/nvcc -gencode arch=compute_20,code=sm_20 >>> -gencode arch=compute_30,code=sm_30 -gencode >>> arch=compute_50,code=sm_50 -gencode arch=compute_52,code=sm_52 >>> -gencode arch=compute_53,code=sm_53 -use_fast_math -O3 -ccbin g++ >>> -I../cusplibrary-0.5.1 -o cuda_cg_wrapper.o -c cuda_cg_wrapper.cu >>> -DCUSP -DPCG -DJacobi -DDIA >>> In file included from cuda_cg_wrapper.cu:832:0: >>> ../cusplibrary-0.5.1/cusp/csr_matrix.h:23:32: fatal error: >>> cusp/detail/config.h: No such file or directory >>> #include <cusp/detail/config.h> >>> ``` >> >> >>> File is indeed missing: >>> >>> ``` >>> $ cd $AMBERHOME/AmberTools/src/pbsa >>> $ ls ../cusplibrary-0.5.1/cusp/detail/config.h >>> ls: cannot access ../cusplibrary-0.5.1/cusp/detail/config.h: No such >>> file or directory >>> ``` >> >> >>> There is no config.h anywhere in the cusp directory. Have you tested >>> by pulling a fresh copy into a new directory and then attempting to >>> configure/install? Am I the only one seeing this? >>> >> >> config.h is in .gitignore (since we don't want to track *our* config.h). >> This is preventing Ray from adding it and "git status" from finding it. >> >> I've fixed this so it should ignore *only* the config.h files that our >> configure script generates.. >> >> .Ray, try adding it again. And after you do, please try a fresh clone and >> build (which would have caught this missing file) and make sure that works >> first. >> >> All the best, >> Jason >> > > -- > ____________________________________________________________________________ > > Prof. Gerald MONARD > Directeur du mésocentre EXPLOR > Université de Lorraine > Boulevard des Aiguillettes B.P. 70239 > F-54506 Vandoeuvre-les-Nancy, FRANCE > > e-mail : Gerald.Monard.univ-lorraine.fr > phone : +33 (0)372.745.279 > web : http://www.monard.info > > ____________________________________________________________________________ > > > _______________________________________________ > AMBER-Developers mailing list > AMBER-Developers.ambermd.org > http://lists.ambermd.org/mailman/listinfo/amber-developers _______________________________________________ AMBER-Developers mailing list AMBER-Developers.ambermd.org http://lists.ambermd.org/mailman/listinfo/amber-developersReceived on Fri Mar 10 2017 - 11:00:02 PST