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-- Ray Luo, Ph.D. Professor of Structural Biology/Biochemistry/Biophysics, Chemical Physics, Biomedical Engineering, and Chemical Engineering Department of Molecular Biology and Biochemistry University of California, Irvine, CA 92697-3900 On Fri, Mar 10, 2017 at 11:59 AM, Gerald Monard <Gerald.Monard.univ-lorraine.fr> wrote: > Hello, > > It builds for me now (gcc + cuda 8.0). > > Gerald. > > On 03/10/2017 07:34 PM, Ray Luo wrote: >> Gerald, >> >> After I "git add" these files by force, looks like they are in. Could >> you check whether you can see these files? >> >> I'm compiling a "git clean -xfd"-ed version. >> >> Ray >> -- >> Ray Luo, Ph.D. >> Professor of Structural Biology/Biochemistry/Biophysics, >> Chemical Physics, Biomedical Engineering, and Chemical Engineering >> Department of Molecular Biology and Biochemistry >> University of California, Irvine, CA 92697-3900 >> >> >> On Fri, Mar 10, 2017 at 8:30 AM, Gerald Monard >> <Gerald.Monard.univ-lorraine.fr> wrote: >>> Hello, >>> >>> When I compare the "original" (=downloaded) version of >>> cusplibrary-0.5.1, I can see the following files missing in the amber >>> git tree: >>> ./build >>> ./build/build-env.py >>> ./build/g++.py >>> ./build/nvcc.py >>> ./cusp >>> ./cusp/detail >>> ./cusp/detail/config.h >>> >>> All the best, >>> >>> Gerald. >>> >>> On 03/10/2017 02:39 PM, Jason Swails wrote: >>>> On Fri, Mar 10, 2017 at 8:12 AM, Daniel Roe <daniel.r.roe.gmail.com> wrote: >>>> >>>>> As of commit 372e01050807ea56cfe36e8164a4f8b4d59b9d1b, still broken. Same >>>>> error. >>>>> >>>>> ``` >>>>> /usr/local/cuda-7.5/bin/nvcc -gencode arch=compute_20,code=sm_20 >>>>> -gencode arch=compute_30,code=sm_30 -gencode >>>>> arch=compute_50,code=sm_50 -gencode arch=compute_52,code=sm_52 >>>>> -gencode arch=compute_53,code=sm_53 -use_fast_math -O3 -ccbin g++ >>>>> -I../cusplibrary-0.5.1 -o cuda_cg_wrapper.o -c cuda_cg_wrapper.cu >>>>> -DCUSP -DPCG -DJacobi -DDIA >>>>> In file included from cuda_cg_wrapper.cu:832:0: >>>>> ../cusplibrary-0.5.1/cusp/csr_matrix.h:23:32: fatal error: >>>>> cusp/detail/config.h: No such file or directory >>>>> #include <cusp/detail/config.h> >>>>> ``` >>>> >>>> >>>>> File is indeed missing: >>>>> >>>>> ``` >>>>> $ cd $AMBERHOME/AmberTools/src/pbsa >>>>> $ ls ../cusplibrary-0.5.1/cusp/detail/config.h >>>>> ls: cannot access ../cusplibrary-0.5.1/cusp/detail/config.h: No such >>>>> file or directory >>>>> ``` >>>> >>>> >>>>> There is no config.h anywhere in the cusp directory. Have you tested >>>>> by pulling a fresh copy into a new directory and then attempting to >>>>> configure/install? Am I the only one seeing this? >>>>> >>>> >>>> config.h is in .gitignore (since we don't want to track *our* config.h). >>>> This is preventing Ray from adding it and "git status" from finding it. >>>> >>>> I've fixed this so it should ignore *only* the config.h files that our >>>> configure script generates.. >>>> >>>> .Ray, try adding it again. And after you do, please try a fresh clone and >>>> build (which would have caught this missing file) and make sure that works >>>> first. >>>> >>>> All the best, >>>> Jason >>>> >>> >>> -- >>> ____________________________________________________________________________ >>> >>> Prof. Gerald MONARD >>> Directeur du mésocentre EXPLOR >>> Université de Lorraine >>> Boulevard des Aiguillettes B.P. 70239 >>> F-54506 Vandoeuvre-les-Nancy, FRANCE >>> >>> e-mail : Gerald.Monard.univ-lorraine.fr >>> phone : +33 (0)372.745.279 >>> web : http://www.monard.info >>> >>> ____________________________________________________________________________ >>> >>> >>> _______________________________________________ >>> AMBER-Developers mailing list >>> AMBER-Developers.ambermd.org >>> http://lists.ambermd.org/mailman/listinfo/amber-developers >> >> _______________________________________________ >> AMBER-Developers mailing list >> AMBER-Developers.ambermd.org >> http://lists.ambermd.org/mailman/listinfo/amber-developers >> > > -- > ____________________________________________________________________________ > > Prof. Gerald MONARD > Directeur du mésocentre EXPLOR > Université de Lorraine > Boulevard des Aiguillettes B.P. 70239 > F-54506 Vandoeuvre-les-Nancy, FRANCE > > e-mail : Gerald.Monard.univ-lorraine.fr > phone : +33 (0)372.745.279 > web : http://www.monard.info > > ____________________________________________________________________________ > > > _______________________________________________ > AMBER-Developers mailing list > AMBER-Developers.ambermd.org > http://lists.ambermd.org/mailman/listinfo/amber-developers _______________________________________________ AMBER-Developers mailing list AMBER-Developers.ambermd.org http://lists.ambermd.org/mailman/listinfo/amber-developersReceived on Fri Mar 10 2017 - 13:00:02 PST