Re: [AMBER-Developers] another amber 14 compile problem netcdf

From: Crowley, Michael <Michael.Crowley.nrel.gov>
Date: Fri, 27 Sep 2013 16:45:03 -0600

OK, thanks Dan, I will just leave it alone and have my own workaround.
Mike

-- 
Michael F. Crowley, Ph.D.
Principal Scientist, Biomolecular Sciences Division
National Renewable Energy Laboratory
1617 Cole Blvd.
Golden, CO 80401
303-384-6345 office
303-887-0149 cell
On 9/27/13 3:17 PM, "Daniel Roe" <daniel.r.roe.gmail.com> wrote:
>I'm not 100% sure but I think mdgx may require '-lnetcdf' since it can
>be
>built as a shared library. Probably we will need to have
>'netcdf_flag' in
>configure2 set as a separate variable in config.h
>(e.g. NETCDF_FLAG) instead
>of having it just be part of FLIBS, and
>have programs that require
>'-lnetcdf' (like nab and mdgx) use that.
>
>-Dan
>
>On Fri, Sep 27, 2013 at 2:51
>PM, Crowley, Michael
><Michael.Crowley.nrel.gov> wrote:
>> Looks like mdgx
>also has  -lnetcdf hardcoded in its Makefile. Do we just
>> replace it with
>$(NETCDFLIB)  ?
>> Mike
>> --
>> Michael F. Crowley, Ph.D.
>> Principal
>Scientist, Biomolecular Sciences Division
>> National Renewable Energy
>Laboratory
>> 1617 Cole Blvd.
>> Golden, CO 80401
>> 303-384-6345 office
>>
>303-887-0149 cell
>>
>>
>>
>>
>>
>>
>>
>> On 9/27/13 1:22 PM, "Crowley, Michael"
><Michael.Crowley.nrel.gov> wrote:
>>
>>>Sorry about the double emails, don't
>know why NREL's server is doing that.
>>>--
>>>Michael F. Crowley,
>Ph.D.
>>>Principal Scientist, Biomolecular Sciences Division
>>>National
>Renewable Energy Laboratory
>>>1617 Cole Blvd.
>>>Golden, CO
>80401
>>>303-384-6345 office
>>>303-887-0149 cell
>>>
>>>
>>>
>>>
>>>
>>>On 9/27/13
>1:19 PM, "Crowley, Michael" <Michael.Crowley.nrel.gov> wrote:
>>>
>>>>Thanks
>Jason,
>>>>I will try that also. Just noticed someone added the pgi compilers
>into
>>>>the default module load, that may be interfering, who
>knows.
>>>>Mike
>>>>
>>>>--
>>>>Michael F. Crowley, Ph.D.
>>>>Principal
>Scientist, Biomolecular Sciences Division
>>>>National Renewable Energy
>Laboratory
>>>>1617 Cole Blvd.
>>>>Golden, CO 80401
>>>>303-384-6345
>office
>>>>303-887-0149 cell
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>On 9/27/13 11:56 AM,
>"Jason Swails" <jason.swails.gmail.com> wrote:
>>>>
>>>>>On Fri, Sep 27, 2013
>at 1:35 PM, David A Case
>>>>><case.biomaps.rutgers.edu>wrote:
>>>>>
>>>>>> On
>Fri, Sep 27, 2013, Crowley, Michael wrote:
>>>>>>
>>>>>> > This is the netcdf
>problem, something about a tag:
>>>>>>
>>>>>> Does it happen with gnu
>compilers?  Which version of intel compilers
>>>>>>are
>>>>>>  you
>>>>>>
>using?
>>>>>>
>>>>>
>>>>>The only time I've seen this before is when compiler
>environment
>>>>>variables
>>>>>are set.  What happens if you
>try
>>>>>
>>>>>unset FC F90 CC CXX F77
>>>>>
>>>>>and then try to build?
>(unsetenv if you are using cshell).
>>>>>
>>>>>--
>>>>>Jason M.
>Swails
>>>>>BioMaPS,
>>>>>Rutgers University
>>>>>Postdoctoral
>Researcher
>>>>>_______________________________________________
>>>>>AMBER-Dev
>elopers mailing 
>list
>>>>>AMBER-Developers.ambermd.org
>>>>>http://lists.ambermd.org/mailman/l
>istinfo/amber-developers
>>>>
>>>>
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>
>--
>-------------------------
>Daniel R. Roe, PhD
>Department of Medicinal
>Chemistry
>University of Utah
>30 South 2000 East, Room 201
>Salt Lake City, UT
>84112-5820
>http://home.chpc.utah.edu/~cheatham/
>(801) 587-9652
>(801)
>585-6208 
>(Fax)
>
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Received on Fri Sep 27 2013 - 16:00:02 PDT
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