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-- Michael F. Crowley, Ph.D. Principal Scientist, Biomolecular Sciences Division National Renewable Energy Laboratory 1617 Cole Blvd. Golden, CO 80401 303-384-6345 office 303-887-0149 cell On 9/27/13 3:17 PM, "Daniel Roe" <daniel.r.roe.gmail.com> wrote: >I'm not 100% sure but I think mdgx may require '-lnetcdf' since it can >be >built as a shared library. Probably we will need to have >'netcdf_flag' in >configure2 set as a separate variable in config.h >(e.g. NETCDF_FLAG) instead >of having it just be part of FLIBS, and >have programs that require >'-lnetcdf' (like nab and mdgx) use that. > >-Dan > >On Fri, Sep 27, 2013 at 2:51 >PM, Crowley, Michael ><Michael.Crowley.nrel.gov> wrote: >> Looks like mdgx >also has -lnetcdf hardcoded in its Makefile. Do we just >> replace it with >$(NETCDFLIB) ? >> Mike >> -- >> Michael F. Crowley, Ph.D. >> Principal >Scientist, Biomolecular Sciences Division >> National Renewable Energy >Laboratory >> 1617 Cole Blvd. >> Golden, CO 80401 >> 303-384-6345 office >> >303-887-0149 cell >> >> >> >> >> >> >> >> On 9/27/13 1:22 PM, "Crowley, Michael" ><Michael.Crowley.nrel.gov> wrote: >> >>>Sorry about the double emails, don't >know why NREL's server is doing that. >>>-- >>>Michael F. Crowley, >Ph.D. >>>Principal Scientist, Biomolecular Sciences Division >>>National >Renewable Energy Laboratory >>>1617 Cole Blvd. >>>Golden, CO >80401 >>>303-384-6345 office >>>303-887-0149 cell >>> >>> >>> >>> >>> >>>On 9/27/13 >1:19 PM, "Crowley, Michael" <Michael.Crowley.nrel.gov> wrote: >>> >>>>Thanks >Jason, >>>>I will try that also. Just noticed someone added the pgi compilers >into >>>>the default module load, that may be interfering, who >knows. >>>>Mike >>>> >>>>-- >>>>Michael F. Crowley, Ph.D. >>>>Principal >Scientist, Biomolecular Sciences Division >>>>National Renewable Energy >Laboratory >>>>1617 Cole Blvd. >>>>Golden, CO 80401 >>>>303-384-6345 >office >>>>303-887-0149 cell >>>> >>>> >>>> >>>> >>>> >>>>On 9/27/13 11:56 AM, >"Jason Swails" <jason.swails.gmail.com> wrote: >>>> >>>>>On Fri, Sep 27, 2013 >at 1:35 PM, David A Case >>>>><case.biomaps.rutgers.edu>wrote: >>>>> >>>>>> On >Fri, Sep 27, 2013, Crowley, Michael wrote: >>>>>> >>>>>> > This is the netcdf >problem, something about a tag: >>>>>> >>>>>> Does it happen with gnu >compilers? Which version of intel compilers >>>>>>are >>>>>> you >>>>>> >using? >>>>>> >>>>> >>>>>The only time I've seen this before is when compiler >environment >>>>>variables >>>>>are set. What happens if you >try >>>>> >>>>>unset FC F90 CC CXX F77 >>>>> >>>>>and then try to build? >(unsetenv if you are using cshell). >>>>> >>>>>-- >>>>>Jason M. >Swails >>>>>BioMaPS, >>>>>Rutgers University >>>>>Postdoctoral >Researcher >>>>>_______________________________________________ >>>>>AMBER-Dev >elopers mailing >list >>>>>AMBER-Developers.ambermd.org >>>>>http://lists.ambermd.org/mailman/l >istinfo/amber-developers >>>> >>>> >>>>________________________________________ >_______ >>>>AMBER-Developers mailing >list >>>>AMBER-Developers.ambermd.org >>>>http://lists.ambermd.org/mailman/lis >tinfo/amber-developers >>> >>> >>>_____________________________________________ >__ >>>AMBER-Developers mailing >list >>>AMBER-Developers.ambermd.org >>>http://lists.ambermd.org/mailman/listi >nfo/amber-developers >> >> >> _______________________________________________ >> >AMBER-Developers mailing list >> AMBER-Developers.ambermd.org >> >http://lists.ambermd.org/mailman/listinfo/amber-developers > > > >-- >------------------------- >Daniel R. Roe, PhD >Department of Medicinal >Chemistry >University of Utah >30 South 2000 East, Room 201 >Salt Lake City, UT >84112-5820 >http://home.chpc.utah.edu/~cheatham/ >(801) 587-9652 >(801) >585-6208 >(Fax) > >_______________________________________________ >AMBER-Developers >mailing >list >AMBER-Developers.ambermd.org >http://lists.ambermd.org/mailman/listinfo/ >amber-developers > > _______________________________________________ AMBER-Developers mailing list AMBER-Developers.ambermd.org http://lists.ambermd.org/mailman/listinfo/amber-developersReceived on Fri Sep 27 2013 - 16:00:02 PDT