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-- Michael F. Crowley, Ph.D. Principal Scientist, Biomolecular Sciences Division National Renewable Energy Laboratory 1617 Cole Blvd. Golden, CO 80401 303-384-6345 office 303-887-0149 cell On 9/27/13 4:45 PM, "Crowley, Michael" <Michael.Crowley.nrel.gov> wrote: >OK, thanks Dan, I will just leave it alone and have my own workaround. >Mike > >-- >Michael F. Crowley, Ph.D. >Principal Scientist, Biomolecular Sciences Division >National Renewable Energy Laboratory >1617 Cole Blvd. >Golden, CO 80401 >303-384-6345 office >303-887-0149 cell > > > > > > > >On 9/27/13 3:17 PM, "Daniel Roe" <daniel.r.roe.gmail.com> wrote: > >>I'm not 100% sure but I think mdgx may require '-lnetcdf' since it can >>be >>built as a shared library. Probably we will need to have >>'netcdf_flag' in >>configure2 set as a separate variable in config.h >>(e.g. NETCDF_FLAG) instead >>of having it just be part of FLIBS, and >>have programs that require >>'-lnetcdf' (like nab and mdgx) use that. >> >>-Dan >> >>On Fri, Sep 27, 2013 at 2:51 >>PM, Crowley, Michael >><Michael.Crowley.nrel.gov> wrote: >>> Looks like mdgx >>also has -lnetcdf hardcoded in its Makefile. Do we just >>> replace it with >>$(NETCDFLIB) ? >>> Mike >>> -- >>> Michael F. Crowley, Ph.D. >>> Principal >>Scientist, Biomolecular Sciences Division >>> National Renewable Energy >>Laboratory >>> 1617 Cole Blvd. >>> Golden, CO 80401 >>> 303-384-6345 office >>> >>303-887-0149 cell >>> >>> >>> >>> >>> >>> >>> >>> On 9/27/13 1:22 PM, "Crowley, Michael" >><Michael.Crowley.nrel.gov> wrote: >>> >>>>Sorry about the double emails, don't >>know why NREL's server is doing that. >>>>-- >>>>Michael F. Crowley, >>Ph.D. >>>>Principal Scientist, Biomolecular Sciences Division >>>>National >>Renewable Energy Laboratory >>>>1617 Cole Blvd. >>>>Golden, CO >>80401 >>>>303-384-6345 office >>>>303-887-0149 cell >>>> >>>> >>>> >>>> >>>> >>>>On 9/27/13 >>1:19 PM, "Crowley, Michael" <Michael.Crowley.nrel.gov> wrote: >>>> >>>>>Thanks >>Jason, >>>>>I will try that also. Just noticed someone added the pgi compilers >>into >>>>>the default module load, that may be interfering, who >>knows. >>>>>Mike >>>>> >>>>>-- >>>>>Michael F. Crowley, Ph.D. >>>>>Principal >>Scientist, Biomolecular Sciences Division >>>>>National Renewable Energy >>Laboratory >>>>>1617 Cole Blvd. >>>>>Golden, CO 80401 >>>>>303-384-6345 >>office >>>>>303-887-0149 cell >>>>> >>>>> >>>>> >>>>> >>>>> >>>>>On 9/27/13 11:56 AM, >>"Jason Swails" <jason.swails.gmail.com> wrote: >>>>> >>>>>>On Fri, Sep 27, 2013 >>at 1:35 PM, David A Case >>>>>><case.biomaps.rutgers.edu>wrote: >>>>>> >>>>>>> On >>Fri, Sep 27, 2013, Crowley, Michael wrote: >>>>>>> >>>>>>> > This is the netcdf >>problem, something about a tag: >>>>>>> >>>>>>> Does it happen with gnu >>compilers? Which version of intel compilers >>>>>>>are >>>>>>> you >>>>>>> >>using? >>>>>>> >>>>>> >>>>>>The only time I've seen this before is when compiler >>environment >>>>>>variables >>>>>>are set. What happens if you >>try >>>>>> >>>>>>unset FC F90 CC CXX F77 >>>>>> >>>>>>and then try to build? >>(unsetenv if you are using cshell). >>>>>> >>>>>>-- >>>>>>Jason M. >>Swails >>>>>>BioMaPS, >>>>>>Rutgers University >>>>>>Postdoctoral >>Researcher >>>>>>_______________________________________________ >>>>>>AMBER-Dev >>elopers mailing >>list >>>>>>AMBER-Developers.ambermd.org >>>>>>http://lists.ambermd.org/mailman/l >>istinfo/amber-developers >>>>> >>>>> >>>>>________________________________________ >>_______ >>>>>AMBER-Developers mailing >>list >>>>>AMBER-Developers.ambermd.org >>>>>http://lists.ambermd.org/mailman/lis >>tinfo/amber-developers >>>> >>>> >>>>_____________________________________________ >>__ >>>>AMBER-Developers mailing >>list >>>>AMBER-Developers.ambermd.org >>>>http://lists.ambermd.org/mailman/listi >>nfo/amber-developers >>> >>> >>> _______________________________________________ >>> >>AMBER-Developers mailing list >>> AMBER-Developers.ambermd.org >>> >>http://lists.ambermd.org/mailman/listinfo/amber-developers >> >> >> >>-- >>------------------------- >>Daniel R. Roe, PhD >>Department of Medicinal >>Chemistry >>University of Utah >>30 South 2000 East, Room 201 >>Salt Lake City, UT >>84112-5820 >>http://home.chpc.utah.edu/~cheatham/ >>(801) 587-9652 >>(801) >>585-6208 >>(Fax) >> >>_______________________________________________ >>AMBER-Developers >>mailing >>list >>AMBER-Developers.ambermd.org >>http://lists.ambermd.org/mailman/listinfo/ >>amber-developers >> >> > > >_______________________________________________ >AMBER-Developers mailing list >AMBER-Developers.ambermd.org >http://lists.ambermd.org/mailman/listinfo/amber-developers _______________________________________________ AMBER-Developers mailing list AMBER-Developers.ambermd.org http://lists.ambermd.org/mailman/listinfo/amber-developersReceived on Fri Sep 27 2013 - 17:00:02 PDT