I had weird errors(?) when running configure.
I guess they are probably related.
Regarding 'm4', I found that netcdf uses it.
Setting AMBERHOME to /home/isjoung/AMBER/amber11
./configure: 363: [[: not found
./configure: 363: no: not found
./configure: 363: no: not found
Obtaining the gnu suite version:
gcc -v
The version is 4.4.1
./configure: 697: [[: not found
./configure: 697: no: not found
./configure: 697: no: not found
[: 697: no: unexpected operator
[: 697: no: unexpected operator
Testing the gcc compiler:
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp testp.c
OK
Validating the C++ compiler version:
g++ -v
The version is 4.4.1
OK
Testing the gfortran compiler:
gfortran -O0 -o testp testp.f
OK
Testing mixed C/Fortran compilation:
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o testp.c.o testp.c
gfortran -O0 -c -o testp.f.o testp.f
gcc -o testp testp.c.o testp.f.o -lgfortran
OK
Testing flex:
OK
Configuring NetCDF; (may be time-consuming)
NetCDF configure succeeded.
Configuring fftw-2.1.5; (may be time-consuming)
fftw-2.1.5 configure succeeded.
The configuration file, config.h, was successfully created.
./configure: 1311: [[: not found
./configure: 1311: no: not found
./configure: 1311: no: not found
The next step is to type 'make -f Makefile_at'
On Wed, Mar 10, 2010 at 4:17 PM, case <case.biomaps.rutgers.edu> wrote:
> On Wed, Mar 10, 2010, InSuk Joung wrote:
>
> > I found that 'flex' was not installed in my system. I installed 'flex'
> and
> > re-compiled AT. Then, everything was fine.
> > However, I think it would be a better way to give a warning in the
> > configuration step.
>
> It's is *supposed* to do exactly that. Can you move flex out of the way
> (so that it is not found) and try to debug why the section in configure "
> Test
> if lex/flex is available and works" (starting about line 933 of configure)
> is not failing.
>
> > Same to 'm4' although this gave me a obvious error message during
> > compilation.
>
> What step needs m4? Should we put in a configure test for that as well as
> for
> flex?
>
> ...thx...dac
>
>
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>
--
Best,
InSuk Joung
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Received on Wed Mar 10 2010 - 18:30:02 PST
