> The configure file now supports the Portland group compilers...I hope
> someone
> will try this out (we don't have these installed here.)
We have some old (6.0) version around and it goes as follows:
1. netcdf/src/config.guess could not guess the LIBC for CC=pgcc
diff -u amber11.old/src/netcdf/src/config.guess
amber11/src/netcdf/src/config.guess
--- amber11.old/src/netcdf/src/config.guess 2008-04-15 19:23:12.000000000
-0400
+++ amber11/src/netcdf/src/config.guess 2009-09-24 22:39:49.671624833 -0400
.. -153,7 +153,7 ..
LIBC=gnu
#endif
EOF
- eval `$CC_FOR_BUILD -E $dummy.c 2>/dev/null | grep LIBC= | sed -e 's: ::g'`
+ eval `$CC_FOR_BUILD -E $dummy.c 2>/dev/null | grep LIBC | sed -e 's: ::g'`
fi
# Note: order is significant - the case branches are not exclusive.
----------------
2. cpp -traditional -P -DNO_SANDER_DIVCON -DBINTRAJ sqm.f > _sqm.f
pgf90 -c -O1 -Mfree -o sqm.o _sqm.f
PGF90-S-0038-Symbol, command_argument_count, has not been explicitly
declared (_sqm.f)
0 inform, 0 warnings, 1 severes, 0 fatal for sqm
tried 'iargc()' -- same result [cutting edge fortran?]
-----------------
3. commented out the 'sqm' target in the toplevel Makefile
-----------------
4. PGC-S-0032-Syntax error: Unexpected input at '/' (./ptraj_local.h: 79)
PGC-S-0029-Syntax error: Recovery attempted by deleting from '/' on line
79 through identifier trajs on line 79 (./ptraj_local.h)
C++ style comment in line 79
-----------------
5. PGC-S-0035-Syntax error: Recovery attempted by replacing '/' by double
0.00000000000000000E+0 (rdparm.c: 710)
-----------------
6. few more C++ comments in the io.c, trajectory.c, ptraj.c
-----------------
7. C++ comment in leap/src/leap/[unit.c,tools.c]
-----------------
8. gleap
pgCC -c -I../../freelib -I../../freelib -o numvec.o numvec.cpp
"numvec.hpp", line 27: warning: omission of explicit type is nonstandard
("int" assumed)
template< typename T > numvec( const std::_Expr<T,double>& rhs )
: std::valarray<double>( rhs ) {}
>> commented it out in Makefile_at
-----------------
9. nab
pgcc -c -Dflex -O2 -DBINTRAJ -o nmode.o nmode.c
PGC-S-0040-Illegal use of symbol, _Complex
(/usr/include/bits/cmathcalls.h: 54)
PGC-W-0114-More than one type specified (/usr/include/bits/cmathcalls.h: 54)
PGC-S-0029-Syntax error: Recovery attempted by deleting from identifier
__z on line 54 to just before ')' on line 54
(/usr/include/bits/cmathcalls.h: 54)
PGC-S-0040-Illegal use of symbol, _Complex
(/usr/include/bits/cmathcalls.h: 54)
PGC-W-0114-More than one type specified (/usr/include/bits/cmathcalls.h: 54)
...
>> commented out in Makefile_at
============================================================================
relevant tests PASSED ok
============================================================================
./configure -oldmkl -mpi pgi
went ok, but
make -f Makefile_at parallel
stopped quickly with
mpicc -c -Dflex -O2 -DBINTRAJ -DMPI -o nmode.o nmode.c
PGC-S-0040-Illegal use of symbol, _Complex
(/usr/include/bits/cmathcalls.h: 54)
PGC-W-0114-More than one type specified (/usr/include/bits/cmathcalls.h: 54)
...
---------------------
cd ptraj; make parallel :
utility.o(.text+0xac6): In function `netcdfDefineDimension':
: undefined reference to `nc_def_dim'
(many more)
compiled OK with libnetcdf.a added by hands.
Best,
Volodymyr
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Received on Thu Sep 24 2009 - 21:00:02 PDT
