Re: [AMBER-Developers] Ions parameters in ff12SB

From: Pawel Janowski <pawelrc.gmail.com>
Date: Wed, 26 Feb 2014 11:21:55 -0500

There was a small error in atomic_ions.cmd where the unit name of the
backwards compatible Na+ was being saved with the new NA name. It only
happened for Na+. This is fixed now and both

addions2 gab NA 0

and

addions2 gab Na+ 0

work correctly for me.

Pawel


On Wed, Feb 26, 2014 at 9:56 AM, David A Case <case.biomaps.rutgers.edu> wrote:
> On Wed, Feb 26, 2014, Gustavo Seabra wrote:
>
>> As far as I can tell, I'm using an up-to-date version. After Jason's
>> changes, I did a "git clean -d" as you suggested, followed by "git
>> pull".
>
> Did you re-check the problem? Do this:
>
> tleap -f leaprc.ff12SB
>> list
>
> Do you not see Na+, K+ and Cl- on the list? Works for me. If you are not
> seeing these, we'll have to debug what is different between your machine and
> mine.
>
> ...dac
>
>
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Received on Wed Feb 26 2014 - 08:30:02 PST
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