Hi,
On Fri, Sep 27, 2013 at 11:18 AM, Crowley, Michael
<Michael.Crowley.nrel.gov> wrote:
> /bin/sh ../libtool --mode=compile ifort -I../libsrc -I. -ip -O3 -xHost -c
> -o typeSizes.lo typeSizes.f90
> libtool: compile: unable to infer tagged configuration
> libtool: compile: specify a tag with `--tag'
The only time I've come across this error is on systems that use
modules to switch between compilers, and having the wrong program
environment set up. Are the intel compiler vars set up correctly? Have
you tried running 'make uninstall', then wiping out all traces of
netcdf:
cd $AMBERHOME
make uninstall
rm lib/libnetcdf* include netcdf.*
I'm able to compile NAB with -nobintraj on my machine, GIT master (up
to date, last commit ID 94e1d6bdfd99c93ec0ecedc0a943739182b81751) with
both gnu (4.7.2) and intel (14.0.0) compilers.
-Dan
> make[4]: *** [typeSizes.lo] Error 1
> make[4]: Leaving directory
> `/store3/Amber/amber14dev/AmberTools/src/netcdf/src/f90'
> make[3]: *** [all-recursive] Error 1
> make[3]: Leaving directory
> `/store3/Amber/amber14dev/AmberTools/src/netcdf/src'
> make[2]: *** [all] Error 2
> make[2]: Leaving directory
> `/store3/Amber/amber14dev/AmberTools/src/netcdf/src'
> make[1]: *** [/store3/Amber/amber14dev/include/netcdf.mod] Error 2
> make[1]: Leaving directory `/store3/Amber/amber14dev/AmberTools/src'
> make: *** [install] Error 2
>
>
>
> --
> Michael F. Crowley, Ph.D.
> Principal Scientist, Biomolecular Sciences Division
> National Renewable Energy Laboratory
> 1617 Cole Blvd.
> Golden, CO 80401
> 303-384-6345 office
> 303-887-0149 cell
>
>
>
>
>
>
>
> On 9/27/13 11:11 AM, "Crowley, Michael" <Michael.Crowley.nrel.gov> wrote:
>
>>Can anyone help me with this, nab make does not finish because of
>>not
>>finding libnetcdf,a I think, but I specified -nobintraj. If I get rid
>>of
>>the nobintraj, then netcdf does not compile, I am plain stuck unless
>>I
>>take nab out of my compile but prefer not to muck with Makefiles.
>>Thanks
>>for any help,
>>Mike
>>
>>% ./configure -nobintraj -nomtkpp -norism intel
>>Š
>>successful
>>
>>% make install
>>.
>>.
>>.
>>make[2]: Entering directory
>>`/store3/Amber/Pristine13/AmberTools/src/nss'
>>ar rv
>>/store3/Amber/Pristine13/lib/libnab.a symop.o tss.o
>>a - symop.o
>>a -
>>tss.o
>>ranlib
>>/store3/Amber/Pristine13/lib/libnab.a
>>/store3/Amber/Pristine13/bin/nab -c
>>matextract.nab
>>/store3/Amber/Pristine13/bin/nab -o matextract
>>matextract.o
>>ld: cannot find -lnetcdf
>>cc failed!
>>make[2]: *** [matextract]
>>Error 1
>>make[2]: Leaving directory
>>`/store3/Amber/Pristine13/AmberTools/src/nss'
>>make[1]: *** [serial] Error
>>2
>>make[1]: Leaving directory `/store3/Amber/Pristine13/AmberTools/src'
>>make:
>>*** [install] Error 2
>>
>>
>>
>>--
>>Michael F. Crowley, Ph.D.
>>Principal Scientist,
>>Biomolecular Sciences Division
>>National Renewable Energy Laboratory
>>1617
>>Cole Blvd.
>>Golden, CO 80401
>>303-384-6345 office
>>303-887-0149 cell
>>
>>
>>
>>
>>
>>
>>
>>On
>>8/27/13 2:56 PM, "Ross Walker" <ross.rosswalker.co.uk> wrote:
>>
>>>Ok - since I
>>needed an excuse to constructively procrastinate and actually
>>>do some
>>useful work rather than wasting time writing proposals that will
>>>just score
>>1 point below the funding line - I have fixed the page.
>>>
>>>
>>>The html is now
>>so clean that I reckon I could render it by hand. If
>>>Chrome still gets it
>>wrong then it is just being dumb.
>>>
>>>It would help if people checked their
>>html carefully when adding to such
>>>pages - basically everything after
>>tutorial A7 was screwed up, mostly from
>>>people cutting and pasting wrong
>>from what I could and also not proof
>>>reading the HTML.
>>>
>>>Some examples of
>>what was wrong:
>>>
>>>Missing </a>
>>>
>>>Lots of <td></td> - not encompassed by
>><tr>...</tr>
>>>
>>>Misplaced </table>
>>>
>>>Several <tr> without matching
>></tr>
>>>
>>>People stuffing images of width > 100 pixels into cells specified
>>as 100
>>>pixel wide.
>>>
>>><center> tag with no </center>
>>>
>>><blockquote>
>>without </blockquote>
>>>
>>>etc etc.
>>>
>>>It's amazing it ever rendered at
>>all.
>>>
>>>All the best
>>>Ross
>>>
>>>On 8/27/13 10:49 AM, "David A Case"
>><case.biomaps.rutgers.edu> wrote:
>>>
>>>>On Tue, Aug 27, 2013, Ross Walker
>>wrote:
>>>>
>>>>> BTW - http://ambermd.org/tutorials/ looks fine for me in
>>Safari and
>>>>> Internet Exploder - what's the issue in Chrome? I suspect it
>>may just
>>>>>be
>>>>> an errant or missing /table given it appears to render
>>okay in other
>>>>> browsers.
>>>>
>>>>It only appears in some versions of Chrome
>>-- the figures disappear about
>>>>half-way down the page. If you locate the
>>missing flag, please go ahead
>>>>and fix it.
>>>>
>>>>But independent of
>>that....the html code on that page is quite ugly, and
>>>>is
>>>>unmaintainable
>>in my view. I'd like to clean it up before embarking on
>>>>a reorganization
>>of the tutorials.
>>>>
>>>>So far, it just looks like people want to argue about
>>wiki's: no one
>>>>wants
>>>>to actually do any
>>work....
>>>>
>>>>...dac
>>>>
>>>>
>>>>_______________________________________________
>>>>AMBER-Developers mailing
>>list
>>>>AMBER-Developers.ambermd.org
>>>>http://lists.ambermd.org/mailman/listi
>>nfo/amber-developers
>>>
>>>
>>>
>>>_______________________________________________
>>
>>>AMBER-Developers mailing
>>list
>>>AMBER-Developers.ambermd.org
>>>http://lists.ambermd.org/mailman/listinf
>>o/amber-developers
>>
>>
>>_______________________________________________
>>AMBER-D
>>evelopers mailing
>>list
>>AMBER-Developers.ambermd.org
>>http://lists.ambermd.org/mailman/listinfo/
>>amber-developers
>>
>>
>
>
> _______________________________________________
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--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 201
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-6208 (Fax)
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Received on Fri Sep 27 2013 - 10:30:04 PDT
