I have fairly detailed instructions for several things here:
http://jswails.wikidot.com/
There are instructions for setting up a Mac, Windows (scanty instructions),
and Ubuntu for use with computational chemistry in general with specifics
on setting it up for Amber. It gives a quick walkthrough on how to use
both aptitude and MacPorts.
Setting up a Mac: http://jswails.wikidot.com/mac-os-x
Installing Amber 12:
http://jswails.wikidot.com/installing-amber12-and-ambertools-12#toc5
There's also a section for installing Amber (AT15+Amber11 and Amber 12),
which includes some tricks and stuff to get the CUDA stuff working (driver
installation) and sander.APBS as well. You're free to link to it, pull
data from it, whatever you want.
All the best,
Jason
On Sat, Feb 18, 2012 at 10:47 AM, case <case.biomaps.rutgers.edu> wrote:
> I've been trying to update section 1.2 of the AmberTools12.lyx file, and
> I'd
> like your help. We should try to have specific instructions about how to
> get the required libraries, and should really double-check the installation
> instructions themselves.
>
> The web site only has specific information about Ubuntu; if anyone knows
> the correct package manager commands for other distros (esp. RedHat, SuSe,
> Fedora....), please add them (ideally to both AmberTools12.lyx and to the
> web
> site.)
>
> Mengjueih's Mac blog is helpful, but assumes that the user already is
> familiar
> with Macports. Plus it will be out of date for the new release. If some
> mac user can flesh out the "port" commands that are needed, that would be
> great.
>
> The MS Windows instructions are so complex that we will probably continue
> to point to people to the web site for details. But this means that we
> need
> to also update http://ambermd.org/mswindows.html. Also, is anyone testing
> Amber12 on cygwin?
>
> Please look at the complete installation instructions in Section 1.2, and
> make
> improvements as needed. Note that there are no installation instructions
> in
> the Amber12.lyx file: to avoid duplication and confusion, we point users to
> the unified instructions that are in the AmberTools12 manual.
>
> ...thanks!...dac
>
>
> _______________________________________________
> AMBER-Developers mailing list
> AMBER-Developers.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber-developers
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Sat Feb 18 2012 - 15:30:01 PST
