Hi All,
Can anyone build sander from the git tree successfully right now?
cd $AMBERHOME/AmberTools/src/
./configure gnu
make install
cd ../../src
make install
...
...
ncsu-abmd-hooks.o ncsu-bbmd-ctxt.o ncsu-bbmd-hooks.o
ncsu-cftree.o ncsu-colvar.o ncsu-colvar-math.o ncsu-colvar-type.o
ncsu-colvar-utils.o ncsu-constants.o ncsu-cv-ANGLE.o ncsu-cv-COM_ANGLE.o
ncsu-cv-COM_DISTANCE.o ncsu-cv-COM_TORSION.o ncsu-cv-COS_OF_DIHEDRAL.o
ncsu-cv-DISTANCE.o ncsu-cv-HANDEDNESS.o ncsu-cv-LCOD.o ncsu-cv-MULTI_RMSD.o
ncsu-cv-N_OF_BONDS.o ncsu-cv-N_OF_STRUCTURES.o ncsu-cv-R_OF_GYRATION.o
ncsu-cv-TORSION.o ncsu-lexer.o ncsu-parser.o ncsu-pmd-hooks.o ncsu-rmsd.o
ncsu-sander-hooks.o ncsu-sander-proxy.o ncsu-smd-hooks.o ncsu-umbrella.o
ncsu-utils.o ncsu-value.o mt19937.o \
/home/rcw/amber11_patch/amber/lib/libFpbsa.a
/home/rcw/amber11_patch/amber/lib/arpack.a -Wl,--start-group
/opt/intel/Compiler/11.1/069/mkl/lib/em64t/libmkl_intel_lp64.a
/opt/intel/Compiler/11.1/069/mkl/lib/em64t/libmkl_sequential.a
/opt/intel/Compiler/11.1/069/mkl/lib/em64t/libmkl_core.a -Wl,--end-group
-lpthread ../../AmberTools/src/lib/nxtsec.o \
../../AmberTools/src/lib/sys.a
/home/rcw/amber11_patch/amber/lib/libnetcdf.a
ncsu-colvar.o: In function `__ncsu_colvar__colvar_print':
_ncsu-colvar.f:(.text+0xb06): undefined reference to
`__ncsu_cv_pca__print_details'
ncsu-colvar.o: In function `__ncsu_colvar__colvar_cleanup':
_ncsu-colvar.f:(.text+0xbe1): undefined reference to
`__ncsu_cv_pca__colvar_cleanup'
ncsu-colvar.o: In function `__ncsu_colvar__colvar_mdread':
_ncsu-colvar.f:(.text+0x10b5): undefined reference to
`__ncsu_read_pca__read_refcrd'
_ncsu-colvar.f:(.text+0x12a8): undefined reference to
`__ncsu_read_pca__read_evec'
_ncsu-colvar.f:(.text+0x1497): undefined reference to
`__ncsu_read_pca__read_avgcrd'
_ncsu-colvar.f:(.text+0x175f): undefined reference to
`__ncsu_read_pca__read_index'
ncsu-colvar.o: In function `__ncsu_colvar__colvar_value':
_ncsu-colvar.f:(.text+0x129): undefined reference to
`__ncsu_cv_pca__colvar_value'
ncsu-colvar.o: In function `__ncsu_colvar__colvar_force':
_ncsu-colvar.f:(.text+0x19b): undefined reference to
`__ncsu_cv_pca__colvar_force'
ncsu-colvar.o: In function `__ncsu_colvar__colvar_bootstrap':
_ncsu-colvar.f:(.text+0x244b): undefined reference to
`__ncsu_cv_pca__colvar_bootstrap'
collect2: ld returned 1 exit status
make[1]: *** [sander] Error 1
make[1]: Leaving directory `/home/rcw/amber11_patch/amber/src/sander'
make: *** [serial] Error 2
Comments?
ncsu_cv_PCA is present (does case matter here?).
All the best
Ross
/\
\/
|\oss Walker
---------------------------------------------------------
| Assistant Research Professor |
| San Diego Supercomputer Center |
| Adjunct Assistant Professor |
| Dept. of Chemistry and Biochemistry |
| University of California San Diego |
| NVIDIA Fellow |
|
http://www.rosswalker.co.uk |
http://www.wmd-lab.org/ |
| Tel: +1 858 822 0854 | EMail:- ross.rosswalker.co.uk |
---------------------------------------------------------
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Received on Mon Jun 20 2011 - 16:00:03 PDT
