Re: [AMBER-Developers] Sander build broken in git tree?

From: Jason Swails <jason.swails.gmail.com>
Date: Mon, 20 Jun 2011 17:27:51 -0600

On Mon, Jun 20, 2011 at 4:59 PM, Ross Walker <ross.rosswalker.co.uk> wrote:

> Hi All,
>
> Can anyone build sander from the git tree successfully right now?
>
> cd $AMBERHOME/AmberTools/src/
> ./configure gnu
> make install
> cd ../../src
> make install
>
> ...
> ...
> ncsu-abmd-hooks.o ncsu-bbmd-ctxt.o ncsu-bbmd-hooks.o
> ncsu-cftree.o ncsu-colvar.o ncsu-colvar-math.o ncsu-colvar-type.o
> ncsu-colvar-utils.o ncsu-constants.o ncsu-cv-ANGLE.o ncsu-cv-COM_ANGLE.o
> ncsu-cv-COM_DISTANCE.o ncsu-cv-COM_TORSION.o ncsu-cv-COS_OF_DIHEDRAL.o
> ncsu-cv-DISTANCE.o ncsu-cv-HANDEDNESS.o ncsu-cv-LCOD.o ncsu-cv-MULTI_RMSD.o
> ncsu-cv-N_OF_BONDS.o ncsu-cv-N_OF_STRUCTURES.o ncsu-cv-R_OF_GYRATION.o
> ncsu-cv-TORSION.o ncsu-lexer.o ncsu-parser.o ncsu-pmd-hooks.o ncsu-rmsd.o
> ncsu-sander-hooks.o ncsu-sander-proxy.o ncsu-smd-hooks.o ncsu-umbrella.o
> ncsu-utils.o ncsu-value.o mt19937.o \
> /home/rcw/amber11_patch/amber/lib/libFpbsa.a
> /home/rcw/amber11_patch/amber/lib/arpack.a -Wl,--start-group
> /opt/intel/Compiler/11.1/069/mkl/lib/em64t/libmkl_intel_lp64.a
> /opt/intel/Compiler/11.1/069/mkl/lib/em64t/libmkl_sequential.a
> /opt/intel/Compiler/11.1/069/mkl/lib/em64t/libmkl_core.a -Wl,--end-group
>

How did these pop up if you're using gnu?

I'll try on my end and report back...

Jason

-- 
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Mon Jun 20 2011 - 16:30:03 PDT
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