Re: [AMBER-Developers] sander.MPI tests randomly stall in Ubuntu 9.10

From: Lachele Foley <lfoley.ccrc.uga.edu>
Date: Wed, 12 May 2010 12:03:03 -0400

4.4.0

I'll have her re-do from a clean un-tar (even if she did this time), just to be sure. I checked her paths. She has gcc aliased to /usr/bin/gcc44 and so forth, and gcc --version yields 4.4.0, etc. The MPI execs all just point to "gcc", so they should go wherever her gcc points.

It might not be RHEL. Could be the machine. Has an AMD processor... any chance that matters?

:-) Lachele

--
B. Lachele Foley, PhD '92,'02
Assistant Research Scientist
Complex Carbohydrate Research Center, UGA
706-542-0263
lfoley.ccrc.uga.edu
----- Original Message -----
From: case
[mailto:case.biomaps.rutgers.edu]
To: AMBER Developers Mailing List
[mailto:amber-developers.ambermd.org]
Sent: Wed, 12 May 2010 11:49:33
-0400
Subject: Re: [AMBER-Developers] sander.MPI tests randomly stall in
Ubuntu 9.10
> On Wed, May 12, 2010, Lachele Foley wrote:
> 
> > 
> > The failures are all from the ncsu set:
> 
> Is this with gcc 4.1.2 or gcc 4.4.0?  The ncsu errors with 4.1.2 are well
> known (and will probably never be fixed); if you had errors with 4.4.0,
> it would be of interest to know what they are.  I've used gcc44 on Ubuntu
> and on CentOS with no such failures, fwiw.
> 
> ....thx...dave
> 
> 
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Received on Wed May 12 2010 - 09:30:03 PDT