Hi Lachele,
thank you. It might be indeed something else. If it fails again with
4.4.0, please give me the outputs [or .diff(s)] to look at. I am not
sure to what extent this can be relevant, but 'man alias' says
...
the alias definition shall not affect the parent process of the current
shell nor any utility environment invoked by the shell; see Shell Exe‐
cution Environment
...
and it thus may be worthwhile to try making 'gcc->gcc44' symlinks
somewhere and then add this somewhere to the front of the PATH.
Thank you & best regards,
Volodymyr
On Wed, May 12, 2010 12:03, Lachele Foley wrote:
> 4.4.0
>
> I'll have her re-do from a clean un-tar (even if she did this time), just
> to be sure. I checked her paths. She has gcc aliased to /usr/bin/gcc44
> and so forth, and gcc --version yields 4.4.0, etc. The MPI execs all just
> point to "gcc", so they should go wherever her gcc points.
>
> It might not be RHEL. Could be the machine. Has an AMD processor... any
> chance that matters?
>
> :-) Lachele
> --
> B. Lachele Foley, PhD '92,'02
> Assistant Research Scientist
> Complex Carbohydrate Research Center, UGA
> 706-542-0263
> lfoley.ccrc.uga.edu
>
>
> ----- Original Message -----
> From: case
> [mailto:case.biomaps.rutgers.edu]
> To: AMBER Developers Mailing List
> [mailto:amber-developers.ambermd.org]
> Sent: Wed, 12 May 2010 11:49:33
> -0400
> Subject: Re: [AMBER-Developers] sander.MPI tests randomly stall in
> Ubuntu 9.10
>
>
>> On Wed, May 12, 2010, Lachele Foley wrote:
>>
>> >
>> > The failures are all from the ncsu set:
>>
>> Is this with gcc 4.1.2 or gcc 4.4.0? The ncsu errors with 4.1.2 are
>> well
>> known (and will probably never be fixed); if you had errors with 4.4.0,
>> it would be of interest to know what they are. I've used gcc44 on
>> Ubuntu
>> and on CentOS with no such failures, fwiw.
>>
>> ....thx...dave
>>
>>
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>> AMBER-Developers.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber-developers
>>
>
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Received on Wed May 12 2010 - 10:30:07 PDT
