Re: [AMBER-Developers] 31 March release candidates for Amber

From: Mengjuei Hsieh <mengjueh.uci.edu>
Date: Thu, 1 Apr 2010 20:52:13 -0700

On Thu, Apr 01, 2010 at 08:34:27AM -0400, case wrote:
> Latest RC is here:
> http://ambermd.org/downloads/AmberTools.31mar10.tar.bz2
> http://ambermd.org/downloads/Amber11.31mar10.tar.bz2

Hi,

About that malloc error of test.mm_pbsa on earlier Mac OS X than 10.6
snow leopard, that highly likely due to the fact of mac os x having a
small stack limit. I've attached a patch to avoid this limit.

Here I have to cut down some array allocations to smaller sizes, thus
a more informative PB bomb message in case of insufficient allocation
is added.

This has been tested on Mac OS X 10.5.8 PPC and 10.5.8 IA32 for
test.mm_pbsa.

Best,
-- 
Mengjuei Hsieh, Luo Research Group, Molecular Biology & Biochemistry,
University of California Irvine.



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Received on Thu Apr 01 2010 - 21:00:02 PDT
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