Hello,
I figured I'd report this here, since it's an issue with compilation...
Linux x86_64; ifort/icc 10.1.015; MKL 10.0.2.018
Compilation error with AmberTools (fails in fftw-2)
if [ "/scratch/crn/aer/swails/newamber/04.01.10/amber11/lib/libfftw2xf_intel.a"
= '/scratch/crn/aer/swails/newamber/04.01.10/amber11/lib/libfftw2xf_intel.a'
]; then\
cd /opt/intel/mkl/10.0.2.018/interfaces/fftw2xf && make libem64t \
compiler=intel PRECISION=MKL_DOUBLE \
INSTALL_DIR=/scratch/crn/aer/swails/newamber/04.01.10/amber11/lib; \
else \
cd ../fftw-2.1.5 && make install; \
fi
make[2]: Entering directory `/opt/intel/mkl/10.0.2.018/interfaces/fftw2xf'
make clean ../../lib/em64t/libfftw2xf_intel.a _IA=em64t
make[3]: Entering directory `/opt/intel/mkl/10.0.2.018/interfaces/fftw2xf'
rm -f ../../lib/em64t/libfftw2xf_intel.a *.o
rm: cannot remove `../../lib/em64t/libfftw2xf_intel.a': Permission denied
make[3]: *** [clean] Error 1
make[3]: Leaving directory `/opt/intel/mkl/10.0.2.018/interfaces/fftw2xf'
make[2]: *** [libem64t] Error 2
make[2]: Leaving directory `/opt/intel/mkl/10.0.2.018/interfaces/fftw2xf'
make[1]: *** [/scratch/crn/aer/swails/newamber/04.01.10/amber11/lib/libfftw2xf_intel.a]
Error 2
make[1]: Leaving directory
`/scratch/crn/aer/swails/newamber/04.01.10/amber11/AmberTools/src/nab'
make: *** [serial] Error 2
Any ideas?
unset MKL_HOME; ./configure intel; make serial
the above appears to work.
Thanks!
Jason
On Thu, Apr 1, 2010 at 8:34 AM, case <case.biomaps.rutgers.edu> wrote:
> Latest RC is here:
>
> http://ambermd.org/downloads/AmberTools.31mar10.tar.bz2
> http://ambermd.org/downloads/Amber11.31mar10.tar.bz2
>
> Notes:
>
> 1. EVB tests are still broken, but I think that Dan and/or Mark are working
> on that.
>
> 2. Does anyone use ti-decomp? Do we have an example (preferably small)
> that is known to work? Do we know that Amber10 was working correctly?
>
> 3. This RC contains the cuda test cases (but not the 2_million_atom one).
> But I haven't tested the CUDA stuff myself.
>
> 4. Please report most things to the wiki:
> http://ambermd.org/pmwiki/pmwiki.php/Main/Amber11test
>
> I've updated a couple of platforms for this RC. If something becomes
> obsolete, (e.g. gets fixed!) please remove it from the wiki, so that
> we can keep that as clean as possible. (I reserve the right to edit or
> remove things that get out of date.)
>
> Thanks to everyone who worked hard on running the test cases over the last
> few days! There was a gigantic change of directory structure, which led to
> glitches...I hope we are getting down more to "real" errors now.
>
> ....dac
>
>
> _______________________________________________
> AMBER-Developers mailing list
> AMBER-Developers.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber-developers
>
--
---------------------------------------
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Thu Apr 01 2010 - 10:00:02 PDT
