Hi All,
I am trying to install the release candidate of AMBER Tools and followed the
instructions in amber11/Readme_at in the release. There appear to be some
minor problems:
Quick installation instructions:
1. Set your AMBERHOME environment variable, e.g.
export AMBERHOME=/usr/local/amber11 (for bash, zsh, ksh...)
setenv AMBERHOME /usr/local/amber11 (for csh, tcsh)
Note: be sure to change the "/usr/local" above to what it should
be for your machine. Also, you should add $AMBERHOME/bin to your
$PATH.
2 Uncompress the tar file:
cd $AMBERHOME/..
tar xvfj AmberTools-1.3.tar.bz2
Consider I am in my home directory and I download and save the .tar.bz2 file
here. I then do:
export AMBERHOME=/scratch/amber11
Then
cd $AMBERHOME/..
this returns:
-bash: cd: /scratch1/amber11/..: No such file or directory
And I end up still in my home directory. The tar extraction then extracts
AmberTools-1.3 into ~/amber11.
I think it would make more sense if this read.
2 Uncompress the tar file:
mkdir $AMBERHOME
cd $AMBERHOME/..
tar xvjf /path_to/AmberTools-1.3.tar.bz2
Of course the README_at file is inside the tar.bz2 file so this is kind of a
chicken and egg problem anyway.
3. Change directory to src. Type "./configure -help" and choose
options for your computer. Then configure:
./configure gnu (example: should work for most systems)
This should be:
3. Change directory to $AMBERHOME/src. Type "./configure -help" and choose
options for your computer. Then configure:
cd $AMBERHOME/src
./configure gnu (example: should work for most systems)
Comments? Shall I just update the Readme in amber11 cvs tree and the at1.3
branch?
The rest appears to work okay. Everything builds correctly and the tests
pass (with 2 minor diffs) on RHEL 4 with Intel 10.1.018.
All the best
Ross
/\
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|\oss Walker
| Assistant Research Professor |
| San Diego Supercomputer Center |
| Tel: +1 858 822 0854 | EMail:- ross.rosswalker.co.uk |
|
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http://www.wmd-lab.org/ |
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Received on Sat Dec 19 2009 - 04:30:02 PST
