I had this exact same problem...
On Tue, Sep 29, 2009 at 1:39 PM, Ben Roberts <roberts.qtp.ufl.edu> wrote:
> Hi all,
>
> Has something changed in the code governing this test? It used to work OK
> for me, but now I suddenly get the following error when testing (though
> compilation works OK):
>
> =====================================================
> Running test to compute GB Newton-Raphson and normal modes:
>
> /opt/intel/mkl/
> 10.0.2.018/lib/em64t/libmkl_intel_lp64.a(_second.o)(.text+0x0)<http://10.0.2.018/lib/em64t/libmkl_intel_lp64.a%28_second.o%29%28.text+0x0%29>:
> In function `second_':
> : multiple definition of `second'
> /scr/wukong_2/roberts/apps/amber11/lib/libnab.a(time.o)(.text+0x0): first
> defined here
> ld: Warning: size of symbol `second' changed from 22 in
> /scr/wukong_2/roberts/apps/amber11/lib/libnab.a(time.o) to 8 in
> /opt/intel/mkl/10.0.2.018/lib/em64t/libmkl_intel_lp64.a(_second.o)<http://10.0.2.018/lib/em64t/libmkl_intel_lp64.a%28_second.o%29>
> cc failed!
> make[1]: *** [asp_test] Error 1
> make[1]: Leaving directory `/scr/wukong_2/roberts/apps/amber11/test/nab'
> make: *** [test.nab] Error 2
>
> At this point, the test exits.
>
>
> I suppose I could work around this problem by just not using the Intel MKL
> libraries; ideally, though, I would be able to use them. But I'm reluctant
> to start changing the names of functions and methods myself. Any ideas on
> the best way forward?
>
> Thanks,
> Ben
>
> --
> Benjamin P. Roberts
> Postdoctoral Research Associate
> Quantum Theory Project
> University of Florida
>
> 2301 New Physics Building #92
> PO Box 118435
> Gainesville FL 32611-8435
> USA
>
> Phone: +1 352 392 6712
> Cell: +1 352 222 3677
>
> Member of the Royal Australian Chemical Institute
> and of the American Chemical Society
>
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Received on Tue Sep 29 2009 - 11:00:02 PDT
