[AMBER-Developers] New error in GB N-R and normal mode test

From: Ben Roberts <roberts.qtp.ufl.edu>
Date: Tue, 29 Sep 2009 13:39:43 -0400

Hi all,

Has something changed in the code governing this test? It used to work
OK for me, but now I suddenly get the following error when testing
(though compilation works OK):

=====================================================
Running test to compute GB Newton-Raphson and normal modes:

/opt/intel/mkl/10.0.2.018/lib/em64t/libmkl_intel_lp64.a(_second.o)(.text+0x0):
In function `second_':
: multiple definition of `second'
/scr/wukong_2/roberts/apps/amber11/lib/libnab.a(time.o)(.text+0x0):
first defined here
ld: Warning: size of symbol `second' changed from 22 in
/scr/wukong_2/roberts/apps/amber11/lib/libnab.a(time.o) to 8 in
/opt/intel/mkl/10.0.2.018/lib/em64t/libmkl_intel_lp64.a(_second.o)
cc failed!
make[1]: *** [asp_test] Error 1
make[1]: Leaving directory `/scr/wukong_2/roberts/apps/amber11/test/nab'
make: *** [test.nab] Error 2

At this point, the test exits.


I suppose I could work around this problem by just not using the Intel
MKL libraries; ideally, though, I would be able to use them. But I'm
reluctant to start changing the names of functions and methods myself.
Any ideas on the best way forward?

Thanks,
Ben

-- 
Benjamin P. Roberts
Postdoctoral Research Associate
Quantum Theory Project
University of Florida
2301 New Physics Building #92
PO Box 118435
Gainesville FL 32611-8435
USA
Phone: +1 352 392 6712
Cell:  +1 352 222 3677
Member of the Royal Australian Chemical Institute
and of the American Chemical Society
_______________________________________________
AMBER-Developers mailing list
AMBER-Developers.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber-developers
Received on Tue Sep 29 2009 - 11:00:02 PDT
Custom Search