Re: [AMBER-Developers] Second release candidate for AmberTools 1.3

From: Scott Brozell <sbrozell.rci.rutgers.edu>
Date: Fri, 25 Sep 2009 13:51:50 -0400

Hi,

Version 6 is from Mar 2005.
Some of your problems are due to an old version.
Read the configure cvs log for problems on a recent version, 9;
these are your netcdf and numvec problems.
If i don't fix these shortly then I'll file a bug report.

thanks,
Scott

On Fri, Sep 25, 2009 at 11:25:14AM -0400, case wrote:
> On Thu, Sep 24, 2009, Volodymyr Babin wrote:
>
> >
> > We have some old (6.0) version around and it goes as follows:
> >
> > 1. netcdf/src/config.guess could not guess the LIBC for CC=pgcc
>
> We'll try the suggested change for a while, then commit if it doesn't break
> anything else.
>
> >
> > 2. cpp -traditional -P -DNO_SANDER_DIVCON -DBINTRAJ sqm.f > _sqm.f
> > pgf90 -c -O1 -Mfree -o sqm.o _sqm.f
> > PGF90-S-0038-Symbol, command_argument_count, has not been explicitly
> > declared (_sqm.f)
> > 0 inform, 0 warnings, 1 severes, 0 fatal for sqm
> >
> > tried 'iargc()' -- same result [cutting edge fortran?]
>
> The docs for Portland group may provide their solution for getting iargc(?)
>
> >
> > C++ style comment in line 79
>
> I fixed the various reported C++ comments, and put into CVS.
>
> > pgCC -c -I../../freelib -I../../freelib -o numvec.o numvec.cpp
> > "numvec.hpp", line 27: warning: omission of explicit type is nonstandard
> > ("int" assumed)
> > template< typename T > numvec( const std::_Expr<T,double>& rhs )
> > : std::valarray<double>( rhs ) {}
>
> Scott is working on this one, which seems to affect more than just Portland
> group(?)
>
> > pgcc -c -Dflex -O2 -DBINTRAJ -o nmode.o nmode.c
> > PGC-S-0040-Illegal use of symbol, _Complex
>
> Does it help to include -DUSE_AMBER_C9XCOMPLEX in your OCFLAGS variable?
> If so, we could add that to the configure script.
>
>
> Thanks for the reports!....dac
>
>
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Received on Fri Sep 25 2009 - 11:00:02 PDT
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