I got the CVS version last night. I'm trying to compile AmberTools
It dies from not finding yacc, but I can't see where it tried to make it (and failed). I don't think I missed any steps:
export AMBERHOME=/programs/amber11_20090902
export PATH=$AMBERHOME/bin:$PATH
export MPI_HOME=/opt/hpmpi
export MKL_HOME=/opt/intel/Compiler/11.0/083/mkl
./configure_at -mpi intel
...... configure said it was happy
[installer.yeats src]$ make -f Makefile_at parallel
Starting installation of AmberTools, version 1.3 MPI at Thu Sep 3 19:54:51 IST 2009.
(cd ptraj && make parallel )
make[1]: Entering directory `/programs/amber11_20090902/src/ptraj'
cd ../clapack; make skip
make[2]: Entering directory `/programs/amber11_20090902/src/clapack'
skipping compilation of LAPACK
make[2]: Leaving directory `/programs/amber11_20090902/src/clapack'
cd ../cblas; make skip
make[2]: Entering directory `/programs/amber11_20090902/src/cblas'
skipping compilation of BLAS
make[2]: Leaving directory `/programs/amber11_20090902/src/cblas'
mpicc -o ptraj.MPI main.o rdparm.o dispatch.o help.o utility.o second.o io.o trajectory.o evec.o torsion.o mask.o rms.o display.o interface.o energy.o experimental.o ptraj.o actions.o analyze.o thermo.o pubfft.o cluster.o clusterLib.o /programs/amber11_20090902/lib/libpdb.a /programs/amber11_20090902/lib/arpack.a /programs/amber11_20090902/lib/f2c.a /opt/intel/Compiler/11.0/083/mkl/lib/em64t/libmkl_lapack.a /opt/intel/Compiler/11.0/083/mkl/lib/em64t/libmkl_em64t.a -L/opt/intel/Compiler/11.0/083/mkl/lib/em64t -lguide -lpthread ../pnetcdf/lib/libpnetcdf.a -lm
/bin/mv ptraj.MPI /programs/amber11_20090902/bin
make[1]: Leaving directory `/programs/amber11_20090902/src/ptraj'
(cd nab && make install )
make[1]: Entering directory `/programs/amber11_20090902/src/nab'
/programs/amber11_20090902/bin/yacc -d nabgrm.y
make[1]: /programs/amber11_20090902/bin/yacc: Command not found
make[1]: *** [y.tab.c] Error 127
make[1]: Leaving directory `/programs/amber11_20090902/src/nab'
make: *** [parallel] Error 2
Other info of possible relevance:
[installer.yeats src]$ ls /programs/amber11_20090902/bin/
ptraj.MPI
[installer.yeats src]$ which icc
/opt/intel/Compiler/11.0/083/bin/intel64/icc
[installer.yeats src]$ which ifort
/opt/intel/Compiler/11.0/083/bin/intel64/ifort
:-) Lachele
--
B. Lachele Foley, PhD '92,'02
Assistant Research Scientist
Complex Carbohydrate Research Center, UGA
706-542-0263
lfoley.ccrc.uga.edu
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Received on Thu Sep 03 2009 - 12:30:19 PDT
