Re: amber-developers: minor (?) issues with amber10 (March 19-version)

From: MengJuei Hsieh <mengjueh.uci.edu>
Date: Wed, 19 Mar 2008 10:10:33 -0700

Hi,

I can confirm 1) and 2) but not 3).

For 1), I have a similar solution at bug44 of bugzilla.
For 2), it's definitely something wrong in the configure_at.

I am still able to run amberpdb_first_rna successfully on my Mac OS X
leopard (ia32 g95) and fedora core 4 linux (ia32 ifort).

Best,

-- 
Mengjuei Hsieh, Luo group, Molecular Biology and Biochemistry, University of
California Irvine. Tel: 49562, Address: 3144 Natural Science I building,
UCI, Irvine CA 92697-3900
> From: Andreas Svrcek-Seiler <svrci.tbi.univie.ac.at>
> Date: Wed, 19 Mar 2008 17:45:19 +0100 (CET)
> To: <amber-developers.scripps.edu>
> 
> Dear all,
> Some thigs I found while playing around with the current cvs snapshot:
> 1) Due to a recent NAB-update it is necessary to
> copy
> ${NABHOME}/src/blocksize.h
> to
> ${AMBERHOME}/src/gleap/mortsrc/nablib
> 
> 2) ${AMBERHOME}/src/Makefile_at
>   (cd resp && make $(G77) ) should be exchanged by
>   (cd resp && make install )
> ...at least I think so.
> 
> 3) The  ${AMBERHOME}/test/ambpdb_first_rna test-case gives me a segfault.
> Since this segfault also occurs with an ambpdb-version compiled in 2004,
> the input file(s) -either prmtop or inpcrd might be corrupt (?).
> 
> I hope this helps,
> best regards
> Andreas

Received on Fri Apr 18 2008 - 21:12:19 PDT