I wonder if it's a CMake problem, or if it's the pytraj problem that Dave
is referring to.
If I find the time, I'll try to dig a little deeper.
Thanks,
Jason
On Thu, Mar 23, 2023 at 2:05 AM Ray Luo <rluo.uci.edu> wrote:
> Jason,
>
> We tried to install the master branch on different platforms but can't
> reproduce your problem. In our installations, NcTest is always inside
> AmberTools/test along with dacdiff in both the src and installation
> directories, so the test passed in all cases.
>
> All the best,
> Ray
> --
> Ray Luo, Ph.D.
> Professor of Structural Biology/Biochemistry/Biophysics,
> Chemical and Materials Physics, Chemical and Biomolecular Engineering,
> Biomedical Engineering, and Materials Science and Engineering
> Department of Molecular Biology and Biochemistry
> University of California, Irvine, CA 92697-3900
> On Tue, Mar 21, 2023 at 12:23 PM Jason Swails via AMBER-Developers
> <amber-developers.ambermd.org> wrote:
> >
> > Hi,
> >
> > When updating ParmEd, I noticed that a bunch of tests in the bar_pbsa
> test
> > comparisons were missing. In particular I'm seeing this:
> >
> > ./Run.bar_pbsa: line 71:
> > /scratch/local/jenkins/cpu/workspace/AmberGitlab/AmberMergeGatePipeline.4
> /cminst/gnu///AmberTools/test/NcTest:
> > No such file or directory
> >
> > <
> https://urldefense.com/v3/__https://jenkins.jasonswails.com/blue/organizations/jenkins/AmberGitlab*2FAmberMergeGatePipeline/detail/AmberMergeGatePipeline/3551/pipeline*step-205-log-4524__;JSM!!CzAuKJ42GuquVTTmVmPViYEvSg!L0CgDWBY55m2xqTjbipWW4rJkAQ0BIlBP9LMPxr0NL19Rgyl5cGapW0SlQaEgW-SiVS6mIyrWx6PXpQrJKf6SK8X8Q$
> >./Run.bar_pbsa:
> > line 72:
> /scratch/local/jenkins/cpu/workspace/AmberGitlab/AmberMergeGatePipeline.4
> /cminst/gnu///AmberTools/test/NcTest:
> > No such file or directory
> > It looks like some files that should've been checked in before were
> > not checked in and, as result, many tests are not actually being run
> > that should be.
> >
> > PBSA makes me think Ray's group? The builds haven't failed before
> > because the scripts don't actually exit with a failure status if these
> > files don't exist (you would have to run scripts with the `-e` flag
> > for that), but nonetheless these tests are never actually getting run
> > because the files don't exist in the git repo.
> >
> > Just a heads up.
> >
> > Thanks,
> >
> > Jason
> >
> > <
> https://urldefense.com/v3/__https://jenkins.jasonswails.com/blue/organizations/jenkins/AmberGitlab*2FAmberMergeGatePipeline/detail/AmberMergeGatePipeline/3551/pipeline*step-205-log-4525__;JSM!!CzAuKJ42GuquVTTmVmPViYEvSg!L0CgDWBY55m2xqTjbipWW4rJkAQ0BIlBP9LMPxr0NL19Rgyl5cGapW0SlQaEgW-SiVS6mIyrWx6PXpQrJKffvIBiAw$
> >
> >
> >
> > --
> > Jason M. Swails
> > _______________________________________________
> > AMBER-Developers mailing list
> > AMBER-Developers.ambermd.org
> >
> https://urldefense.com/v3/__http://lists.ambermd.org/mailman/listinfo/amber-developers__;!!CzAuKJ42GuquVTTmVmPViYEvSg!L0CgDWBY55m2xqTjbipWW4rJkAQ0BIlBP9LMPxr0NL19Rgyl5cGapW0SlQaEgW-SiVS6mIyrWx6PXpQrJKdy5p1icg$
>
--
Jason M. Swails
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Received on Thu Mar 23 2023 - 05:30:05 PDT
