I believe leap is still the default, Dave mentioned that *X*leap isn't
widely used though.
Cando looks quite promising as a leap replacement, though I'm not sure if
it's ready for wide use yet.
carlos
On Fri, Jan 27, 2023 at 9:33 AM Steinbrecher, Thomas via AMBER-Developers <
amber-developers.ambermd.org> wrote:
> Apologies if this is a dumb question from someone who has missed the last
> ten years of amber news, but what would be considered the default
> replacement for leap? The manual still seems to consider it the standard
> preparation tool.
>
> I set up a few simulations in good old Xleap now and found it pretty much
> exactly as I remembered, good parts and bad. While such consistency is
> admirable, if there are newer and more continuously developed alternatives,
> I'd love to look at them...
>
> Kind Regards,
>
> Thomas
>
> On Thu, Jan 26, 2023 at 6:28 PM David A Case via AMBER-Developers <
> amber-developers.ambermd.org> wrote:
>
> > On Wed, Jan 25, 2023, Brent Krueger via AMBER-Developers wrote:
> >
> > >Is everyone else already aware that Illumina has named the chemistry
> > >process that is in their new sequencing instruments: XLEAP-SBS? I just
> > >learned this today. Seems like infringement.
> >
> > Doesn't bother me. I don't think anyone will be confused, and Amber's
> > xleap
> > program is rarely used anymore.
> >
> > ....dac
> >
> >
> > _______________________________________________
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> > AMBER-Developers.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber-developers
> >
>
>
> --
> *Dr. Thomas Steinbrecher*
> Principal Scientist CADD
>
> Roche Pharma Research and Early Development
> Roche Innovation Center Basel
> F. Hoffmann-La Roche Ltd
> Bldg. 092/3.92
> Grenzacherstrasse 124
> 4070 Basel
> Switzerland
>
> Phone +41 61 682 1319
> mailto: thomas.steinbrecher.roche.com
> _______________________________________________
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>
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Received on Fri Jan 27 2023 - 07:00:03 PST
