[AMBER-Developers] Some more tests with hopefully small enough errors to get changed test criteria

From: Åke Sandgren via AMBER-Developers <amber-developers.ambermd.org>
Date: Fri, 26 Aug 2022 14:56:30 +0200

Hi!

I'm collecting some more tests that show (to me) small enough errors to
be ignored, or rather get changed test critera.

I also see a bunch of problems with the cpptraj tests that will need
it's own thread.

These are all serial tests.

===
b-an02 [~]$ less
/dev/shm/eb-ake/AmberTools/22.3/foss-2021b/AmberTools/test/leap/Yildirim/rGACU.rst7.dif
43c43
< 9.6269172 5.7568099 -3.4605438 9.6139824 6.7206887 -2.9735424
---
 >    9.6269172   5.7568099  -3.4605438   9.6139824   6.7206886  -2.9735424
===
===
b-an02 [~]$ less 
/dev/shm/eb-ake/AmberTools/22.3/foss-2021b/AmberTools/test/leap/4PY5/4py5.rst7.dif
1786c1786
<   28.0540000  56.7150000 103.2280000  28.7684243  56.9001627 103.9175013
---
 >   28.0540000  56.7150000 103.2280000  28.7684243  56.9001628 103.9175013
2104c2104
<   27.1390000  47.7520000  96.5910000  26.5697443  47.9714246  97.4942718
---
 >   27.1390000  47.7520000  96.5910000  26.5697442  47.9714246  97.4942718
===
===
b-an02 [~]$ less 
/dev/shm/eb-ake/AmberTools/22.3/foss-2021b/AmberTools/test/rism1d/spc-kh/spc.xvv.other.dif
43c43
<   5.9583872041744979E-1 -8.8128430347391506E-1
 >   5.9583872486430189E-1 -8.8128603489919655E-1
46c46
<  -1.6024920012659376E-17 -2.2662169277074149E-17 -2.8867934551721919E-1
 >  -6.6764939671316818E-18 -2.2308190428680561E-17 -2.8867934551721919E-1
47c47
<  -8.1649069689310616E-1  1.3877787807814457E-16  2.8867924486401886E-1
 >  -8.1649069689310616E-1  1.8858618445887117E-16  2.8867924486401891E-1
48c48
<   8.1649069689310605E-1 -8.3266726846886741E-17  2.8867944617041941E-1
 >   8.1649069689310605E-1 -7.1689658353483897E-17  2.8867944617041946E-1
### Maximum absolute error in matching lines = 1.73e-06 at line 43 field 2
### Maximum relative error in matching lines = 1.40e+00 at line 46 field 1
===
===
b-an02 [~]$ less 
/dev/shm/eb-ake/AmberTools/22.3/foss-2021b/AmberTools/test/rism1d/spc-psen/spc-nacl-3.xvv.other.dif
43c43
<  -4.1905578467660748E-1 -3.3751363012375157E-1 -3.8550148548325745E+2 
  3.6832158327033585E+2
 >  -4.1905577113508030E-1 -3.3751074873064968E-1 -3.8550153176998379E+2 
  3.6832158323394935E+2
46c46
<  -3.2049840025318752E-17 -4.5324338554148299E-17 -2.8867934551721919E-1
 >  -3.4032498618328134E-17 -3.6957899699425022E-17 -2.8867934551721919E-1
47c47
<  -8.1649069689310616E-1  1.3877787807814457E-16  2.8867924486401886E-1
 >  -8.1649069689310616E-1  1.3307503322761334E-16  2.8867924486401886E-1
48c48
<   8.1649069689310605E-1 -8.3266726846886741E-17  2.8867944617041941E-1
 >   8.1649069689310605E-1 -7.1689658353483897E-17  2.8867944617041946E-1
### Maximum absolute error in matching lines = 2.88e-06 at line 43 field 2
### Maximum relative error in matching lines = 1.61e-01 at line 48 field 2
===
===
b-an02 [~]$ less 
/dev/shm/eb-ake/AmberTools/22.3/foss-2021b/AmberTools/test/rism1d/spc-psen/spc-nacl-3.hvv_dT.dif
5c5
<    0. -3.28605373E-1 -3.21922818E-1 -3.24804674E-1  1.20333952E+1 
1.43001896E+1 -3.19065841E+3  1.51993914E+1  1.29349395E+1 
-2.11666297E+3 -3.18954034E+3
 >    0. -3.28605374E-1 -3.21922836E-1 -3.24804667E-1  1.20333955E+1 
1.43001895E+1 -3.19065832E+3  1.51993914E+1  1.29349395E+1 
-2.11666297E+3 -3.18954035E+3
### Maximum absolute error in matching lines = 9.00e-05 at line 5 field 7
### Maximum relative error in matching lines = 2.82e-08 at line 5 field 7
===
===
b-an02 [~]$ less 
/dev/shm/eb-ake/AmberTools/22.3/foss-2021b/AmberTools/test/rism1d/spc-hnc/spc-lj.xvv.other.dif
40c40
<   7.5884627263335869E-1 -7.1828043764385929E-1 -2.1313434309984263E+1
 >   7.5884626161047142E-1 -7.1827101267830940E-1 -2.1313541873238488E+1
43c43
<  -1.6024920012659376E-17 -2.2662169277074149E-17 -2.8867934551721919E-1
 >  -6.6764939671316818E-18 -2.2308190428680561E-17 -2.8867934551721919E-1
44c44
<  -8.1649069689310616E-1  1.3877787807814457E-16  2.8867924486401886E-1
 >  -8.1649069689310616E-1  1.8858618445887117E-16  2.8867924486401891E-1
45c45
<   8.1649069689310605E-1 -8.3266726846886741E-17  2.8867944617041941E-1
 >   8.1649069689310605E-1 -7.1689658353483897E-17  2.8867944617041946E-1
### Maximum absolute error in matching lines = 9.42e-06 at line 40 field 2
### Maximum relative error in matching lines = 1.40e+00 at line 43 field 1
===
===
b-an02 [~]$ less 
/dev/shm/eb-ake/AmberTools/22.3/foss-2021b/AmberTools/test/rism1d/tip3p-kh/tip3p.xvv.other.dif
43c43
<   5.2776853985820626E-1 -9.7344109315341076E-1
 >   5.2776854292553022E-1 -9.7343707206152097E-1
46c46
<   1.5934922268881836E-17 -4.7431921529578561E-17 -2.9294097635797300E-1
 >  -3.1448990624440816E-17 -4.2183633576305053E-34 -2.9294097635797300E-1
47c47
<  -7.5695057706448032E-1  1.3877787807814449E-16  2.9294097752160336E-1
 >  -7.5695057706448055E-1 -1.7818458423576312E-32  2.9294097752160347E-1
48c48
<   7.5695057706448021E-1 -5.5511151231257809E-17  2.9294097519434281E-1
 >   7.5695057706448043E-1 -5.7118216899167722E-34  2.9294097519434270E-1
### Maximum absolute error in matching lines = 4.02e-06 at line 43 field 2
### Maximum relative error in matching lines = 9.72e+16 at line 48 field 2
===
===
b-an02 [~]$ less 
/dev/shm/eb-ake/AmberTools/22.3/foss-2021b/AmberTools/test/kmmd/kmmd_sander/mdout.dif
919,920c919,920
<  EELEC  =        90.37  EHBOND  =         0.  RESTRAINT  =         0.07
<  EAMBER (non-restraint)  =       124.64
---
 >  EELEC  =        90.37  EHBOND  =         0.  RESTRAINT  =         0.09
 >  EAMBER (non-restraint)  =       124.61
===
===
b-an02 [~]$ less 
/dev/shm/eb-ake/AmberTools/22.3/foss-2021b/AmberTools/src/mm_pbsa/Examples/05_MMPBSA_Decomp_Residue/test_statistics.out.dif
6c6
<          3          7       4.63       1.13      12.69       0.81 
  17.32       1.91      -3.33       0.41      -3.26       0.40 
-6.59       0.47       8.88       1.61      -7.44       2.08       1.44 
       1.72      10.19       1.05       1.99       2.96      12.18 
  2.74      -4.34       1.06      -3.17       1.62      -7.50       1.08 
       0.02       0.01       0.       0.       0.02       0.01 
-4.31       1.07      -3.17       1.62      -7.48       1.08       5.87 
       0.39      -1.17       1.35       4.70       1.72      -3.19 
  0.70      -0.59       0.74      -3.78       0.65      -3.17       0.71 
      -0.59       0.74      -3.76       0.66       7.01       0.62 
  1.41       2.29       8.42       2.49
 >          3          7       4.63       1.13      12.69       0.81 
   17.32       1.91      -3.33       0.41      -3.26       0.40 
-6.59       0.47       8.88       1.61      -7.44       2.08       1.44 
       1.72      10.19       1.05       1.99       2.96      12.18 
  2.74      -4.34       1.06      -3.17       1.62      -7.50       1.08 
       0.02       0.01       0.       0.       0.02       0.01 
-4.31       1.07      -3.17       1.62      -7.48       1.08       5.87 
       0.39      -1.17       1.35       4.70       1.72      -3.19 
  0.70      -0.59       0.74      -3.78       0.65      -3.17       0.71 
      -0.59       0.74      -3.76       0.66       7.01       0.62 
  1.40       2.29       8.42       2.49
### Maximum absolute error in matching lines = 1.00e-02 at line 6 field 65
### Maximum relative error in matching lines = 7.14e-03 at line 6 field 65
===
===
b-an02 [~]$ less 
/dev/shm/eb-ake/AmberTools/22.3/foss-2021b/test/pgm_512wat/nve.out.dif
189c189
<  Etot   =         0.0156  EKtot   =         3.2681  EPtot      = 
    3.2825
 >  Etot   =         0.0191  EKtot   =         3.2681  EPtot      = 
     3.2825
### Maximum absolute error in matching lines = 3.50e-03 at line 189 field 3
### Maximum relative error in matching lines = 2.24e-01 at line 189 field 3
===
===
test/sebomd/AM1-d-PhoT/nucleoside/min.out.save and md.out.save probably 
needs to be updated for the output of AmberTools 22
b-an02 [~]$ less 
/dev/shm/eb-ake/AmberTools/22.3/foss-2021b/test/sebomd/AM1-d-PhoT/nucleoside/min.out.dif
79c79
<  ERROR: NO PARAMETER FOR ATOM     31 (ATOMIC NUMBER = 15)
 >  ODD NUMBER OF ELECTRONS IS NOT ALLOWED FOR A CLOSED-SHELL CALCULATION
===
-- 
Ake Sandgren, HPC2N, Umea University, S-90187 Umea, Sweden
Internet: ake.hpc2n.umu.se  Mobile: +46 70 7716134  Fax: +46 90-580 14
WWW: http://www.hpc2n.umu.se
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Received on Fri Aug 26 2022 - 06:00:10 PDT
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