Silent fail on gcc 5.4.0, compilers updated, but cmake keeps insisting I'm
still on 5.4.0
gcc --version
gcc (Ubuntu 8.4.0-1ubuntu1~16.04.1) 8.4.0
Copyright (C) 2018 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
On Mon, Mar 7, 2022 at 5:07 PM Scott Le Grand <varelse2005.gmail.com> wrote:
> Got a bit further, but this error is more or less useless:
>
> Call Stack (most recent call first):
> cmake/AmberBuildSystem2ndInit.cmake:30 (include)
> CMakeLists.txt:111 (include)
>
>
> -- Configuring incomplete, errors occurred!
> See also
> "/media/work/slegrand/amber20_src/build/CMakeFiles/CMakeOutput.log".
>
> No obvious errors in this file, just apparently punts after:
> Run Build Command(s):/usr/bin/make cmTC_3302b/fast
> /usr/bin/make -f CMakeFiles/cmTC_3302b.dir/build.make
> CMakeFiles/cmTC_3302b.dir/build
> make[1]: Entering directory
> '/media/work/slegrand/amber20_src/build/CMakeFiles/CMakeTmp'
> Building Fortran object
> CMakeFiles/cmTC_3302b.dir/testFortranCompilerF90.f90.o
> /usr/bin/gfortran -c
> /media/work/slegrand/amber20_src/build/CMakeFiles/CMakeTmp/testFortranCompilerF90.f90
> -o CMakeFiles/cmTC_3302b.dir/testFortranCompilerF90.f90.o
> Linking Fortran executable cmTC_3302b
> /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_3302b.dir/link.txt
> --verbose=1
> /usr/bin/gfortran
> CMakeFiles/cmTC_3302b.dir/testFortranCompilerF90.f90.o -o cmTC_3302b
> make[1]: Leaving directory
> '/media/work/slegrand/amber20_src/build/CMakeFiles/CMakeTmp'
>
> On Mon, Mar 7, 2022 at 4:51 PM Scott Le Grand <varelse2005.gmail.com>
> wrote:
>
>> Is it in your pmemd/src directory?
>>
>>
>>
>> On Mon, Mar 7, 2022 at 4:50 PM Jason Swails <jason.swails.gmail.com>
>> wrote:
>>
>>> Maybe the file was deleted and the git tree needs to be cleaned?
>>>
>>> --
>>> Jason M. Swails
>>>
>>> > On Mar 7, 2022, at 7:46 PM, Scott Le Grand <varelse2005.gmail.com>
>>> wrote:
>>> >
>>> > That major thing I'm seeing is that that xray_unit_cell.F90 file
>>> doesn't
>>> > even exist.
>>> >
>>> > cmake and configure deliver the same error.
>>> >
>>> >> On Mon, Mar 7, 2022 at 4:30 PM Jason Swails <jason.swails.gmail.com>
>>> wrote:
>>> >>
>>> >> Our CI tests serial and parallel builds via cmake, so master builds
>>> should
>>> >> work fine.
>>> >>
>>> >> How are you building? Configure or cmake? (The former is unsupported
>>> and
>>> >> dependencies are likely out of date at this point).
>>> >>
>>> >>
>>> >> --
>>> >> Jason M. Swails
>>> >>
>>> >>> On Mar 7, 2022, at 7:10 PM, Scott Le Grand <varelse2005.gmail.com>
>>> >> wrote:
>>> >>>
>>> >>> Anyone else seeing this?
>>> >>>
>>> >>> [PMEMD] FC xray_globals.F90
>>> >>> xray_globals.F90:5:7:
>>> >>>
>>> >>> use xray_unit_cell_module, only: unit_cell_t
>>> >>> 1
>>> >>> Fatal Error: Can't open module file ‘xray_unit_cell_module.mod’ for
>>> >> reading
>>> >>> at (1): No such file or directory
>>> >>> _______________________________________________
>>> >>> AMBER-Developers mailing list
>>> >>> AMBER-Developers.ambermd.org
>>> >>> http://lists.ambermd.org/mailman/listinfo/amber-developers
>>> >> _______________________________________________
>>> >> AMBER-Developers mailing list
>>> >> AMBER-Developers.ambermd.org
>>> >> http://lists.ambermd.org/mailman/listinfo/amber-developers
>>> >>
>>> > _______________________________________________
>>> > AMBER-Developers mailing list
>>> > AMBER-Developers.ambermd.org
>>> > http://lists.ambermd.org/mailman/listinfo/amber-developers
>>> _______________________________________________
>>> AMBER-Developers mailing list
>>> AMBER-Developers.ambermd.org
>>> http://lists.ambermd.org/mailman/listinfo/amber-developers
>>>
>>
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Received on Mon Mar 07 2022 - 19:30:03 PST
