Re: [AMBER-Developers] The continuous integration is failing!

From: Scott Brozell <sbrozell.rci.rutgers.edu>
Date: Wed, 5 Dec 2018 16:22:10 -0500

Hi,

git version 1.7.1

Note that make errors from parmed are being ignored:
> > > make[2]: *** [parmed] Error 1

This is just a build of master on a local machine.
"The continuous integration is failing!" was intended to be a joke
on chicken little with allusions to current events, but humor is
harder than MD apparently:
What came first the chicken or the egg - on my face
:)

scott

On Wed, Dec 05, 2018 at 03:29:52PM -0500, Jason Swails wrote:
> The continuous integration at https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fjenkins.jasonswails.com&amp;data=02%7C01%7Csbrozell%40iqb.rutgers.edu%7C2ece4896fa674015a08908d65af077b2%7Cb92d2b234d35447093ff69aca6632ffe%7C1%7C0%7C636796386185126425&amp;sdata=qdGewuGUG0iPgeFIeBG6kMAjzu47ahIIliZqSrlRR%2Bw%3D&amp;reserved=0 is working
> correctly. Where does this come from?
>
> It looks like versioneer (a 3rd party module for semantic versioning) is
> not using git rev-list the correct way. But this should be failing
> everywhere... unless git changed how rev-list works.
>
> What version of git is being used for this build?
>
> Thanks,
> Jason
>
> On Wed, Dec 5, 2018 at 3:12 PM Scott Brozell <sbrozell.rci.rutgers.edu>
> wrote:
>
> > Hi,
> >
> > Maybe no one got the joke since it seems that it was a stretch to expect
> > Ræv Skrævto be entered into a
> > search bar and get to
> > https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fen.wikipedia.org%2Fwiki%2FChicken_Little&amp;data=02%7C01%7Csbrozell%40iqb.rutgers.edu%7C2ece4896fa674015a08908d65af077b2%7Cb92d2b234d35447093ff69aca6632ffe%7C1%7C0%7C636796386185126425&amp;sdata=KJOepquyRVKxK8niGW2vnOu7XyoHC2WorcdkGDp296o%3D&amp;reserved=0
> > :-O
> >
> > But this bug report was intended to show that parmed was not being built.
> > One detail i omitted from the report was
> > Red Hat Enterprise Linux Server release 6.10 (Santiago)
> >
> > This happens before the Traceback and might also be useful:
> > ...
> > make[2]: Entering directory `/tmp/master/AmberTools/src'
> > (cd parmed && PYTHONPATH=/tmp/master/lib/python2.7/site-packages
> > /tmp/master/bin/amber.python setup.py install -f --prefix=/tmp/master)
> > usage: git rev-list [OPTION] <commit-id>... [ -- paths... ]
> > ...
> >
> > Everything else seems to build.
> >
> > scott
> >
> > On Wed, Dec 05, 2018 at 12:32:19PM -0500, Prof. Ræv Skræv wrote:
> > > Hi,
> > >
> > > The continuous integration is failing!
> > >
> > > Traceback (most recent call last):
> > > File "setup.py", line 160, in <module>
> > > version=versioneer.get_version(),
> > > File "/tmp/master/AmberTools/src/parmed/versioneer.py", line 1427, in
> > get_version
> > > return get_versions()["version"]
> > > File "/tmp/master/AmberTools/src/parmed/versioneer.py", line 1401, in
> > get_versions
> > > pieces = from_vcs_f(cfg.tag_prefix, root, verbose)
> > > File "/tmp/master/AmberTools/src/parmed/versioneer.py", line 1068, in
> > git_pieces_from_vcs
> > > pieces["distance"] = int(count_out) # total number of commits
> > > TypeError: int() argument must be a string or a number, not 'NoneType'
> > > make[2]: *** [parmed] Error 1
> > > make[2]: Leaving directory `/tmp/master/AmberTools/src'
> > > make[1]: *** [serial] Error 2
> > >
> > > The continuous integration is failing!
> > >
> > > Linux ruby 2.6.32-754.3.5.el6.x86_64 #1 SMP Thu Aug 9 11:56:22 EDT 2018
> > x86_64 x86_64 x86_64 GNU/Linux
> > > ...
> > > # On branch master
> > > commit 7b2f6baae587931afd4a4f0ba39d90c5f1e4ed45
> > > ...
> > > ./configure -mkl intel
> > > ...
> > > Should I download and install Miniconda for you? [y/n] y
> > > Downloading an Amber-compatible Python version 2.7 via Miniconda
> > > ...
> > > icc version 18.0.3 (gcc version 7.3.0 compatibility)
> > >
> > > The continuous integration is failing!
> > >
> > >
> > > In other news, the sky is falling!
> > >
> > https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.skyandtelescope.com%2Fastronomy-news%2Fcomet-46p-wirtanen-approaches-earth%2F&amp;data=02%7C01%7Csbrozell%40iqb.rutgers.edu%7C2ece4896fa674015a08908d65af077b2%7Cb92d2b234d35447093ff69aca6632ffe%7C1%7C0%7C636796386185136442&amp;sdata=c7L69neOnG5XquOyVHjnX45i81moc0kfEKlwcy15Ie8%3D&amp;reserved=0
> > >
> > > Ræv Skræv
> > >
> > >
> >
> > _______________________________________________
> > AMBER-Developers mailing list
> > AMBER-Developers.ambermd.org
> > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Flists.ambermd.org%2Fmailman%2Flistinfo%2Famber-developers&amp;data=02%7C01%7Csbrozell%40iqb.rutgers.edu%7C2ece4896fa674015a08908d65af077b2%7Cb92d2b234d35447093ff69aca6632ffe%7C1%7C0%7C636796386185136442&amp;sdata=3MSRyV62wUObFadxUhPDe7yss93uLAgY8I%2Fx5yluPjc%3D&amp;reserved=0
> >
>
>
> --
> Jason M. Swails
> _______________________________________________
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Received on Wed Dec 05 2018 - 13:30:02 PST
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