Re: [AMBER-Developers] CUDA build fails for PBSA

From: Daniel Roe <daniel.r.roe.gmail.com>
Date: Sat, 11 Mar 2017 13:47:50 +0000

Hi Gerald,

I'm not sure why you are not seeing the same errors that I am. If not too
much trouble can you send me off list the complete output from one of your
builds ( via > output 2>&1)? I'll see if I can track this down.

-Dan

On Sat, Mar 11, 2017 at 8:31 AM Gerald Monard <
Gerald.Monard.univ-lorraine.fr> wrote:

> Here are my latest build updates (on a different machine than yesterday,
> now SL 6.2):
>
> | | gcc-4.9.4 | gcc-5.4.0 | gcc-6.3.0 |
> | cuda 7.5 | OK | NO | NO |
> | cuda 8.0 | OK | OK | NO |
>
> In file included from /opt/cuda-8.0/bin/..//include/cuda_runtime.h:78:0,
> from <command-line>:0:
> /opt/cuda-8.0/bin/..//include/host_config.h:119:2: error: #error --
> unsupported GNU version! gcc versions later than 5 are not supported!
> #error -- unsupported GNU version! gcc versions later than 5 are not
> supported!
> ^~~~~
> make[1]: *** [cuda_cg_wrapper.o] Error 1
> make[1]: Leaving directory
> `/auto/tms1/amber/amber14-git/master/amber-test/AmberTools/src/pbsa'
>
> Do we need to publish a compatibility matrix between gnu/intel/etc. and
> cuda versions?
>
> Gerald.
>
>
> On 03/11/2017 02:18 PM, David Case wrote:
> > On Sat, Mar 11, 2017, Gerald Monard wrote:
> >
> >> /apps/cuda/cuda-7.5/include/host_config.h:115:2: error: #error --
> >> unsupported GNU version! gcc versions later than 4.9 are not supported!
> >> #error -- unsupported GNU version! gcc versions later than 4.9 are not
> >> supported!
> >> ^
> >
> > ...ooh...if this is correct, we need to get intercept this at the
> configure2
> > stage, and not try to build pbsa.cuda.
> >
> > ....dac
> >
> > p.s.: pbsa.cuda builds for me, gcc 4.4.7, cuda 7.5.
> >
> > ....dac
> >
> >
> > _______________________________________________
> > AMBER-Developers mailing list
> > AMBER-Developers.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber-developers
> >
>
> --
>
> ____________________________________________________________________________
>
> Prof. Gerald MONARD
> Directeur du mésocentre EXPLOR
> Université de Lorraine
> Boulevard des Aiguillettes B.P. 70239
> F-54506 Vandoeuvre-les-Nancy, FRANCE
>
> e-mail : Gerald.Monard.univ-lorraine.fr
> phone : +33 (0)372.745.279
> web : http://www.monard.info
>
>
> ____________________________________________________________________________
>
>
> _______________________________________________
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>
-- 
-------------------------
Daniel R. Roe
Laboratory of Computational Biology
National Institutes of Health, NHLBI
5635 Fishers Ln, Rm T900
Rockville MD, 20852
https://www.lobos.nih.gov/lcb
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Received on Sat Mar 11 2017 - 06:00:03 PST
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