Speaking of the manual -- I've been meaning to get to an edit but my
teaching load this semester is killing me so I can see that it is just not
going to happen. I'm passing this along to the list here in hopes that
someone will take a look at this (if it hasn't been done already).
It should be a quick thing -- just fixing section numbering in the parmed
part of the manual. Apparently chamber has multiple sub-sections that
ought to be numbered within the chamber section (14.2.2.8.X), but instead
get their own number at the highest section level (14.X). See his note
below:
The ParmEd section (14.2) starts on page 242. The command description
> starts in section 14.2.2 and each command has its own section 14.2.2.x up
> until and including section 14.2.2.8 chamber (page 245) at which point it
> begins a long description of chamber. This description is divided up into
> subsections starting on page 252 with section 14.3 (should be 14.2.2.8.1
> which throws off the number leading to the change command being in section
> 14.2.4.1 (rather than section 14.2.2.9) on page 253.
Again, I apologize that I can't do this myself nor even look at git to see
if it was already fixed long ago.
Thank you all,
Brent
On Tue, Feb 28, 2017 at 8:08 AM, David Case <david.case.rutgers.edu> wrote:
> Hi everyone:
>
> The code freeze deadline for AmberTools17 will be Monday, March 6. Some
> notes:
>
> 1. Don't push anything to the master branch that is not appropriate for
> release in April. Don't rush to put in last-minute updates in
> functionality:
> remember our goal that only code that is actcively being used should be
> considered for release. Please don't add anything just to satisfy some
> idea
> of what someone else might want--we have too many options already.
>
> 2. As in past years, we will temporarily freeze the master branch for a
> short
> time as we prepare for the release. Please use branches for developments
> not
> intended for AmberTools17. (I know there are other ways to handle this
> release chore, but we've gone this road for many years, with few
> complaints.
> I will endeavor to re-open the master branch as soon as possible.)
>
> 3. Please finalize contributions to the Reference Manual by March 20.
> Please
> look over you sections, **add new citations for recent work,** add
> examples,
> clarify language, and so on. Please look at the author list, and propose
> appropriate changes: we prune this list to recent contributions, so
> suggestions for both additions and deletions are appropriate.
>
> ...thx...dac
>
>
> _______________________________________________
> AMBER-Developers mailing list
> AMBER-Developers.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber-developers
>
--
_______________________________________________
Brent P. Krueger.....................phone: 616 395 7629
Professor.................................fax: 616 395 7118
Hope College..........................Schaap Hall 2120
Department of Chemistry
Holland, MI 49423
_______________________________________________
AMBER-Developers mailing list
AMBER-Developers.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber-developers
Received on Tue Feb 28 2017 - 05:30:07 PST
