First thing first, I always "git clean -xfd" before rebuilding. I'll try
different thead values to see whether I can reproduce the problem.
Also all object files for sander are separately defined and built so this
could be something higher up.
Ray
On May 26, 2016 10:04 AM, "Daniel Roe" <daniel.r.roe.gmail.com> wrote:
On Thu, May 26, 2016, Ray Luo wrote:
> Okay, I've just confirmed again that I can
> make -j 32 install
> if I turned off python building. I don't know too much how the python
> part is built ... Please take a look of the dependence relations
> related to python building.
Nope - still fails for me with '--skip-python'. It's almost certainly
an issue with pbsa/libpbsa dependencies since that is where the build
always fails for me ('make -j4'):
```
mpif90 -DBINTRAJ -DMPI -c -O3 -mtune=native -fPIC -ffree-form
-I/home/droe/Amber/GIT/amber/include
-I/home/droe/Amber/GIT/amber/include -o pb_force.o pb_force.F90
pb_force.F90:292:77:
sa_init, sa_driver, sa_free,
sa_free_mb, &
1
Error: Symbol ‘saslave_init’ referenced at (1) not found in module
‘solvent_accessibility’
Makefile:226: recipe for target 'pb_force.o' failed
make[3]: *** [pb_force.o] Error 1
```
-Dan
--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 307
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-6208 (Fax)
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Received on Thu May 26 2016 - 10:30:04 PDT
