Re: [AMBER-Developers] Parallel make failing

From: Ray Luo <rluo.uci.edu> Date: Thu, 26 May 2016 08:13:47 -0700

--
Ray Luo, Ph.D.
Professor
Biochemistry, Molecular Biophysics, Chemical Physics,
Chemical and Biomedical Engineering
University of California, Irvine, CA 92697-3900
On Thu, May 26, 2016 at 7:44 AM, Hai Nguyen <nhai.qn.gmail.com> wrote:
> a bit more: seems happen randomly in my case.
>
> Hai
>
> On Thu, May 26, 2016 at 10:42 AM, Hai Nguyen <nhai.qn.gmail.com> wrote:
>
>> Yes, I can confirm that. After failing with `make install -j8`, I need to
>> `make install` to continue the compiling.
>>
>> Hai
>>
>>
>> On Thu, May 26, 2016 at 10:40 AM, Daniel Roe <daniel.r.roe.gmail.com>
>> wrote:
>>
>>> Using the current GIT tree, 'make -jX' is failing around pbsa again:
>>>
>>> ```
>>> mpif90  -DBINTRAJ -DMPI    -c -O3 -mtune=native -fPIC  -ffree-form
>>> -I/home/droe/Amber/GIT/amber/include
>>> -I/home/droe/Amber/GIT/amber/include    -o pb_force.o pb_force.F90
>>> pb_force.F90:292:77:
>>>
>>>                                       sa_init, sa_driver, sa_free,
>>> sa_free_mb,  &
>>>
>>>    1
>>> Error: Symbol ‘saslave_init’ referenced at (1) not found in module
>>> ‘solvent_accessibility’
>>> Makefile:226: recipe for target 'pb_force.o' failed
>>> make[3]: *** [pb_force.o] Error 1
>>> make[3]: *** Waiting for unfinished jobs....
>>> make[3]: Leaving directory
>>> '/home/droe/Amber/GIT/amber/AmberTools/src/pbsa'
>>> Makefile:479: recipe for target 'libpbsa' failed
>>> make[2]: *** [libpbsa] Error 2
>>> make[2]: Leaving directory
>>> '/home/droe/Amber/GIT/amber/AmberTools/src/sander'
>>> Makefile:232: recipe for target 'parallel' failed
>>> make[1]: *** [parallel] Error 2
>>> make[1]: Leaving directory '/home/droe/Amber/GIT/amber/AmberTools/src'
>>> Makefile:7: recipe for target 'install' failed
>>> make: *** [install] Error 2
>>> ```
>>>
>>> Single-threaded 'make' succeeds but takes a long, long time. Anyone
>>> else seeing this?
>>>
>>> -Dan
>>>
>>> --
>>> -------------------------
>>> Daniel R. Roe, PhD
>>> Department of Medicinal Chemistry
>>> University of Utah
>>> 30 South 2000 East, Room 307
>>> Salt Lake City, UT 84112-5820
>>> http://home.chpc.utah.edu/~cheatham/
>>> (801) 587-9652
>>> (801) 585-6208 (Fax)
>>>
>>> _______________________________________________
>>> AMBER-Developers mailing list
>>> AMBER-Developers.ambermd.org
>>> http://lists.ambermd.org/mailman/listinfo/amber-developers
>>>
>>
>>
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