a bit more: seems happen randomly in my case.
Hai
On Thu, May 26, 2016 at 10:42 AM, Hai Nguyen <nhai.qn.gmail.com> wrote:
> Yes, I can confirm that. After failing with `make install -j8`, I need to
> `make install` to continue the compiling.
>
> Hai
>
>
> On Thu, May 26, 2016 at 10:40 AM, Daniel Roe <daniel.r.roe.gmail.com>
> wrote:
>
>> Using the current GIT tree, 'make -jX' is failing around pbsa again:
>>
>> ```
>> mpif90 -DBINTRAJ -DMPI -c -O3 -mtune=native -fPIC -ffree-form
>> -I/home/droe/Amber/GIT/amber/include
>> -I/home/droe/Amber/GIT/amber/include -o pb_force.o pb_force.F90
>> pb_force.F90:292:77:
>>
>> sa_init, sa_driver, sa_free,
>> sa_free_mb, &
>>
>> 1
>> Error: Symbol ‘saslave_init’ referenced at (1) not found in module
>> ‘solvent_accessibility’
>> Makefile:226: recipe for target 'pb_force.o' failed
>> make[3]: *** [pb_force.o] Error 1
>> make[3]: *** Waiting for unfinished jobs....
>> make[3]: Leaving directory
>> '/home/droe/Amber/GIT/amber/AmberTools/src/pbsa'
>> Makefile:479: recipe for target 'libpbsa' failed
>> make[2]: *** [libpbsa] Error 2
>> make[2]: Leaving directory
>> '/home/droe/Amber/GIT/amber/AmberTools/src/sander'
>> Makefile:232: recipe for target 'parallel' failed
>> make[1]: *** [parallel] Error 2
>> make[1]: Leaving directory '/home/droe/Amber/GIT/amber/AmberTools/src'
>> Makefile:7: recipe for target 'install' failed
>> make: *** [install] Error 2
>> ```
>>
>> Single-threaded 'make' succeeds but takes a long, long time. Anyone
>> else seeing this?
>>
>> -Dan
>>
>> --
>> -------------------------
>> Daniel R. Roe, PhD
>> Department of Medicinal Chemistry
>> University of Utah
>> 30 South 2000 East, Room 307
>> Salt Lake City, UT 84112-5820
>> http://home.chpc.utah.edu/~cheatham/
>> (801) 587-9652
>> (801) 585-6208 (Fax)
>>
>> _______________________________________________
>> AMBER-Developers mailing list
>> AMBER-Developers.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber-developers
>>
>
>
_______________________________________________
AMBER-Developers mailing list
AMBER-Developers.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber-developers
Received on Thu May 26 2016 - 08:00:04 PDT
