Same problem with gnu compilers
make[3]: Leaving directory `/home/rcw/amber/AmberTools/src/quick/src'
gfortran -o /home/rcw/amber/bin/quick src/main.o ./src/quick_lib.a ./src/modules/quick_modules.a ./src/subs/quick_subs.a src/fake_amber_interface.o -fPIC -I/home/rcw/amber/include -I/home/rcw/amber/include -I/opt/intel/composer_xe_2015.2.164/mkl//include -O3 -L/home/rcw/amber/lib -larpack -lxblas-amb -Wl,--start-group /opt/intel/composer_xe_2015.2.164/mkl//lib/intel64/libmkl_intel_lp64.a /opt/intel/composer_xe_2015.2.164/mkl//lib/intel64/libmkl_sequential.a /opt/intel/composer_xe_2015.2.164/mkl//lib/intel64/libmkl_core.a -Wl,--end-group -lpthread -ldl
make[2]: Leaving directory `/home/rcw/amber/AmberTools/src/quick'
(if [ "no" = "no" ]; then \
make python_serial ;\
fi;\
)
make[2]: Entering directory `/home/rcw/amber/AmberTools/src'
(cd parmed && /home/rcw/amber/bin/amber.python setup.py install --no-setuptools -f --prefix=/home/rcw/amber --install-scripts=/home/rcw/amber/bin)
OpenBLAS: pthread_creat error in blas_thread_init function. Error code:11
make[2]: *** [parmed] Error 1
make[2]: Leaving directory `/home/rcw/amber/AmberTools/src'
make[1]: *** [serial] Error 2
make[1]: Leaving directory `/home/rcw/amber/AmberTools/src'
make: *** [install] Error 2
unsetting MKL_HOME also does not work
ranlib quick_lib.a
make[3]: Leaving directory `/home/rcw/amber/AmberTools/src/quick/src'
gfortran -o /home/rcw/amber/bin/quick src/main.o ./src/quick_lib.a ./src/modules/quick_modules.a ./src/subs/quick_subs.a src/fake_amber_interface.o -fPIC -I/home/rcw/amber/include -I/home/rcw/amber/include -O3 -L/home/rcw/amber/lib -larpack -llapack -lblas -lxblas-amb
make[2]: Leaving directory `/home/rcw/amber/AmberTools/src/quick'
(if [ "no" = "no" ]; then \
make python_serial ;\
fi;\
)
make[2]: Entering directory `/home/rcw/amber/AmberTools/src'
(cd parmed && /home/rcw/amber/bin/amber.python setup.py install --no-setuptools -f --prefix=/home/rcw/amber --install-scripts=/home/rcw/amber/bin)
OpenBLAS: pthread_creat error in blas_thread_init function. Error code:11
make[2]: *** [parmed] Error 1
make[2]: Leaving directory `/home/rcw/amber/AmberTools/src'
make[1]: *** [serial] Error 2
make[1]: Leaving directory `/home/rcw/amber/AmberTools/src'
make: *** [install] Error 2
> On Mar 22, 2016, at 19:31, Jason Swails <jason.swails.gmail.com> wrote:
>
> Does it happen with the GNU compilers?
>
> On Tue, Mar 22, 2016 at 10:29 PM, Ross Walker <ross.rosswalker.co.uk> wrote:
>
>> MKL_HOME makes no difference either way - same problem.
>>
>> --skip-python avoids the issue.
>>
>>
>>> On Mar 22, 2016, at 18:30, David A Case <david.case.rutgers.edu> wrote:
>>>
>>> On Tue, Mar 22, 2016, Ross Walker wrote:
>>>
>>>> [rcw.comet-ln3 amber]$ cat /etc/redhat-release
>>>> CentOS release 6.7 (Final)
>>>>
>>>> ./configure intel
>>>> (I said yes to download the miniconda stuff)
>>>> make
>>>>
>>>> (cd parmed && /home/rcw/amber/bin/amber.python setup.py install
>> --no-setuptools -f --prefix=/home/rcw/amber
>> --install-scripts=/home/rcw/amber/bin)
>>>> OpenBLAS: pthread_creat error in blas_thread_init function. Error
>> code:11
>>>
>>> Just curious: does the --skip-python flag at least allow one to get
>> around
>>> this problem?
>>>
>>> Second question: Does it make a difference if you load the MKL module?
>>> (MKL provides its own version of BLAS, and it may be most people (like
>> me)
>>> that test intel builds also use MKL.)
>>>
>>> ...dac
>>>
>>>
>>> _______________________________________________
>>> AMBER-Developers mailing list
>>> AMBER-Developers.ambermd.org
>>> http://lists.ambermd.org/mailman/listinfo/amber-developers
>>
>>
>> _______________________________________________
>> AMBER-Developers mailing list
>> AMBER-Developers.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber-developers
>>
>
>
>
> --
> Jason M. Swails
> _______________________________________________
> AMBER-Developers mailing list
> AMBER-Developers.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber-developers
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Received on Tue Mar 22 2016 - 21:00:03 PDT
