Re: [AMBER-Developers] git logs and squashing commits

From: Brent Krueger <kruegerb.hope.edu>
Date: Fri, 26 Feb 2016 11:12:40 -0500

As someone who is responsible for a multi-user facility that currently
operates CentOS 5.6 and uses version 12.0 of the Intel compilers, I'd like
to second Ross's notes about working to support older (AND STABLE)
systems. If I'm the only one running something this old, then I will admit
that the problem is mine and we will work to upgrade, but I suspect that is
not the case.


Also, it is probably relevant for me to note that somewhere between Jan 14
and today things have stopped building nicely for me. It appears that my
libfftw is out of date, which seems strange to me since this is something
that I believe configure checks. I wonder if the code requirements
increased without someone updating configure accordingly? Anyway, the most
obvious error I am seeing is that I do not have libfftw3.so.3 This
happens at the point when the build is working on cpptraj.

I'm attaching my build output for anyone who wishes to wade through it.


Cheers,
Brent



On Fri, Feb 26, 2016 at 10:44 AM, Daniel Roe <daniel.r.roe.gmail.com> wrote:

> On Fri, Feb 26, 2016 at 8:37 AM, Ross Walker <ross.rosswalker.co.uk>
> wrote:
> > Recent means CentOS 7? Or also CentOS 6? - We should at least be testing
> on all OS versions that still under official support. I think this also
> means CentOS 5 although I don't see many systems running this anymore. But
> 6 is very ubiquitous. A lot of people still install 6 on new machines given
> how much they screwed things up in 7.
> >
> > We should probably add Suse to that list as well.
> >
> > Do github offer CI hardware that includes various GPUs? (and KNC Xeon
> Phi would be useful too).
>
> I don't think they do (although someone correct me if I'm wrong here).
> I think we would have to set up our own test server for things like
> that, but GitHub (and probably similar things like GitLab) have hooks
> you can set up to do this automatically (see e.g.
> https://developer.github.com/guides/building-a-ci-server/).
>
> Having our own servers might actually be the best way to go in the
> long run since we should certainly cover as many of the common
> environments as we possibly can, which may be a bit too much for
> Travis, especially considering the size of the test cases for e.g.
> sander. Speaking of that - after this release it may be worth seeing
> if we can streamline the test cases somewhat...
>
> -Dan
>
> >
> > All the best
> > Ross
> > _______________________________________________
> > AMBER-Developers mailing list
> > AMBER-Developers.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber-developers
>
>
>
> --
> -------------------------
> Daniel R. Roe, PhD
> Department of Medicinal Chemistry
> University of Utah
> 30 South 2000 East, Room 307
> Salt Lake City, UT 84112-5820
> http://home.chpc.utah.edu/~cheatham/
> (801) 587-9652
> (801) 585-6208 (Fax)
>
> _______________________________________________
> AMBER-Developers mailing list
> AMBER-Developers.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber-developers
>



-- 
_______________________________________________
Brent P. Krueger.....................phone:   616 395 7629
Professor.................................fax:       616 395 7118
Hope College..........................Schaap Hall 2120
Department of Chemistry
Holland, MI     49423



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Received on Fri Feb 26 2016 - 08:30:06 PST
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