VMD can't do most of this - that was the nice thing about Sirius - it allowed you to do lots of cool things moving molecules relative to each other etc. It sucks it died because the funding ran out. :-(
Last time I looked (many years ago I might add) it was the only non-comercial program that supported this sort of functionality. Things might have changed though and it would be great if someone could research a suitable tool for doing this sort of thing. Or if someone perhaps wants to 'volunteer' to resurrect Sirius? :-S
All the best
Ross
> On Sep 15, 2015, at 11:43 AM, David A Case <david.case.rutgers.edu> wrote:
>
>> I'm trying to reproduce the step 2 of AMBER A1 tutorial with VMD
>> (http://ambermd.org/tutorials/advanced/tutorial1/section2.htm) because
>> Sirius is no longer available.
>
> It would be great to get a volunteer to update this tutorial. Just saying...
>
> ...thx...dac
>
>
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Received on Tue Sep 15 2015 - 12:00:09 PDT
