> On Sep 11, 2014, at 12:08 AM, wmsmith.uci.edu wrote:
>
> Hello everyone,
> I am trying to create a patch to fix something for pbsa right now but I
> need to run test cases and make sure everything works first.
>
> I am running on an ubuntu 14 platform. I recently made a clean clone of
> the amber14 master branch and attempted to configure and compile it under
> gnu. The build fails with the message:
>
> error: command 'i686-linux-gnu-gcc' failed with exit status 1
>
> It looks like something related to pysander is failing. I don't think its
> related to what I need to do, so is there a way to turn it off so that I
> can continue compiling?
> The leading lines were:
>
> (cd pysander && /usr/bin/python2.7 setup.py install --prefix
> /home/wmsmith/amber14_new)
> running install
> running build
> running build_py
> creating build
> creating build/lib.linux-i686-2.7
> creating build/lib.linux-i686-2.7/sander
> copying sander/__init__.py -> build/lib.linux-i686-2.7/sander
> creating build/lib.linux-i686-2.7/sanderles
> copying sanderles/__init__.py -> build/lib.linux-i686-2.7/sanderles
> running build_ext
> building 'sander.pysander' extension
> creating build/temp.linux-i686-2.7
> creating build/temp.linux-i686-2.7/sander
> creating build/temp.linux-i686-2.7/sander/src
> i686-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2
> -Wall -Wstrict-prototypes -fPIC -I/home/wmsmith/amber14_new/include
> -I/usr/include/python2.7 -c sander/src/pysandermodule.c -o
> build/temp.linux-i686-2.7/sander/src/pysandermodule.o
> sander/src/pysandermodule.c:15:33: fatal error: CompatibilityMacros.h: No
> such file or directory
> #include "CompatibilityMacros.h"
> ^
> compilation terminated.
Well that's embarrassing. I forgot to add that file. Rookie mistake. I've added it now and it should hopefully work.
Thanks!
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Thu Sep 11 2014 - 03:30:02 PDT
