[AMBER-Developers] Amber14 master branch not compiling under gnu

From: <wmsmith.uci.edu>
Date: Wed, 10 Sep 2014 21:08:00 -0700

Hello everyone,
 I am trying to create a patch to fix something for pbsa right now but I
need to run test cases and make sure everything works first.

I am running on an ubuntu 14 platform. I recently made a clean clone of
the amber14 master branch and attempted to configure and compile it under
gnu. The build fails with the message:

error: command 'i686-linux-gnu-gcc' failed with exit status 1

It looks like something related to pysander is failing. I don't think its
related to what I need to do, so is there a way to turn it off so that I
can continue compiling?
The leading lines were:

(cd pysander && /usr/bin/python2.7 setup.py install --prefix
running install
running build
running build_py
creating build
creating build/lib.linux-i686-2.7
creating build/lib.linux-i686-2.7/sander
copying sander/__init__.py -> build/lib.linux-i686-2.7/sander
creating build/lib.linux-i686-2.7/sanderles
copying sanderles/__init__.py -> build/lib.linux-i686-2.7/sanderles
running build_ext
building 'sander.pysander' extension
creating build/temp.linux-i686-2.7
creating build/temp.linux-i686-2.7/sander
creating build/temp.linux-i686-2.7/sander/src
i686-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2
-Wall -Wstrict-prototypes -fPIC -I/home/wmsmith/amber14_new/include
-I/usr/include/python2.7 -c sander/src/pysandermodule.c -o
sander/src/pysandermodule.c:15:33: fatal error: CompatibilityMacros.h: No
such file or directory
 #include "CompatibilityMacros.h"
compilation terminated.

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Received on Wed Sep 10 2014 - 21:30:02 PDT
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