Re: [AMBER-Developers] Problem installing Amber14 after ugrade to Ubuntu 14

From: Robin Betz <rbetz.ucsd.edu>
Date: Thu, 12 Jun 2014 13:10:05 -0700

Hi,

Ubuntu 14 upgrades to texinfo-5.x from texinfo-4.13. This is a significant
update, as some syntax that is valid with texinfo-4 is now unsupported.
Try downgrading to texinfo-4.13: sudo apt-get install texinfo=4.13.
Then try recompiling.

Hope this helps,
Robin


On Thu, Jun 12, 2014 at 12:18 PM, <wmsmith.uci.edu> wrote:

> Hello,
> I just upgraded my system from Ubuntu 12 (precise) to Ubuntu 14 (trusty).
> When I try to install a clean clone of the Amber14 master branch, it
> configures just fine but throws an error during installation of fftw-3.
>
> Amber14 installed perfectly fine before the upgrade, and installs just
> fine (after an upgrade to netcdf library) on the other computers in the
> lab that are running ubuntu12. I went through and double checked that all
> needed packages are installed and up to date after the upgrade to ubuntu14
> and everything checks out.
>
> If any more information is needed (system specs, etc.) to help figure this
> out let me know and I can send them.
> The tail end of the install log is included below for reference.
>
> Thanks,
> -Wes
>
> Here is the tail end of the install log:
> ./modern-fortran.texi:458: superfluous argument to .end tex: 2d real
> array: (possibly involving .twodims)
> ./modern-fortran.texi:469: warning: .ifinfo should only appear at a line
> beginning (possibly involving .threedims)
> ./modern-fortran.texi:469: superfluous argument to .end tex: 3d complex
> array: (possibly involving .threedims)
> make[5]: *** [fftw3.info] Error 1
> make[5]: Leaving directory
> `/home/wmsmith/amber14/AmberTools/src/fftw-3.3/doc'
> make[4]: *** [all-recursive] Error 1
> make[4]: Leaving directory
> `/home/wmsmith/amber14/AmberTools/src/fftw-3.3/doc'
> make[3]: *** [all-recursive] Error 1
> make[3]: Leaving directory `/home/wmsmith/amber14/AmberTools/src/fftw-3.3'
> make[2]: *** [all] Error 2
> make[2]: Leaving directory `/home/wmsmith/amber14/AmberTools/src/fftw-3.3'
> make[1]: *** [/home/wmsmith/amber14/lib/libfftw3.a] Error 2
> make[1]: Leaving directory `/home/wmsmith/amber14/AmberTools/src'
> make: *** [install] Error 2
>
>
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Received on Thu Jun 12 2014 - 13:30:02 PDT
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