On Mon, Jan 27, 2014 at 11:42 PM, Ross Walker <ross.rosswalker.co.uk> wrote:
> Git Tree as of 20:30 PST Jan 27th 2014:
>
> ./configure gnu
> make -j8 install
>
> gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native
> -I/cbio/jclab/home/rcw/amber/include -I/cbio/jclab/home/rcw/amber/include
> -DRISMSANDER -I../sander -o se_corrections_tools.o
> se_corrections_tools.F90
> gfortran -DBINTRAJ -DEMIL -c -O3 -mtune=native
> -I/cbio/jclab/home/rcw/amber/include -I/cbio/jclab/home/rcw/amber/include
> -DRISMSANDER -I../sander -o se_corrections_module.o
> se_corrections_module.F90
> se_corrections_module.F90:20.55:
>
> computeGauss, compPEP
> 1
> Fatal Error: Can't open module file 'se_corrections_tools.mod' for reading
> at (1): No such file or directory
> make[3]: *** [se_corrections_module.o] Error 1
> make[3]: *** Waiting for unfinished jobs....
> se_corrections_tools.F90:14.75:
>
> initMAISparams, checkMAIS, getMAISparams
>
> 1
> Fatal Error: Can't open module file 'se_corrections_params.mod' for
> reading at (1): No such file or directory
> make[3]: *** [se_corrections_tools.o] Error 1
> make[3]: Leaving directory `/cbio/jclab/home/rcw/amber/src/sebomd'
> make[2]: *** [sebomd] Error 2
> make[2]: Leaving directory `/cbio/jclab/home/rcw/amber/src/sander'
> make[1]: *** [serial] Error 2
> make[1]: Leaving directory `/cbio/jclab/home/rcw/amber/src'
> make: *** [install] Error 2
>
>
>
>
> However then issuing
>
> make install
>
> works.
>
> Looks like the dependencies for SEBOMD need updating properly.
>
Nothing like parallel make to expose broken dependencies. They should be
fixed now, but as I did them by hand they warrant checking. (I never saw
this with 6-way parallel make)
If parallel make breaks again, we can try and fix it.
All the best,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Tue Jan 28 2014 - 03:00:02 PST
