Re: [AMBER-Developers] addIonsRand command segfaulting

From: David A Case <case.biomaps.rutgers.edu>
Date: Wed, 20 Feb 2013 14:56:29 -0500

On Tue, Feb 19, 2013, Robin Betz wrote:
>
> addIonsRand replaces random solvent molecules with ions, and to grab a
> solvent molecule's position uses its imaging atom. The problem is that for
> some reason TIP4P water doesn't have an imaging atom. In solvent.lib the
> entries for TIP4PEWBOX and TIP4PBOX have an imaging atom index of 0:

Sounds like we should fix TIP4PEWBOX. I'm not sure how these were made in the
first place, but it should be possible to make them have an imaging atom.

...dac


_______________________________________________
AMBER-Developers mailing list
AMBER-Developers.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber-developers
Received on Wed Feb 20 2013 - 12:00:03 PST
Custom Search