Re: [AMBER-Developers] Fortran experts, a word of advice please

From: <>
Date: Wed, 25 Jul 2012 12:33:48 -0400 (EDT)

Hi all,

I also think, while individual compile directives would be useful, we
would also have to enforce some policy on how people should use them and
which ones are acceptable and so on. As long as only the softcore module
would need a 'precise' option, it may not be worth the effort to create a
better option system.

Jason, I have prepared the bug fix for A12 (its fixed in the A13 tree
already) as described on the wiki, but get an error message from

[steinbrt.tcbpc142 amber]$ ./ -b bugfix.8
[steinbrt.tcbpc142 amber]$

works ok, but then

[steinbrt.tcbpc142 amber]$ ./ -b bugfix.8 -a
I will now try applying this patch.
You did not tell me what commit to apply the patch on. I'm guessing
you want the second-newest commit: 3236d34e2daa196766a9cedaf19269f7095b32c9
I could not do a git-status. Not enough resources?

but git status works fine from the command line:

[steinbrt.tcbpc142 amber]$ git status
# On branch amber12-with-patches
# Your branch is ahead of 'origin/amber12-with-patches' by 1 commit.
nothing to commit (use -u to show untracked files)

and the log shows that the script would have picked the right commit:

[steinbrt.tcbpc142 amber]$ git log
commit 8fc53fad4ef8ef2ea02aab9563e59a555250ad42
Author: Joe Q. Developer <>
Date: Wed Jul 25 18:24:53 2012 +0200

    bugfix.8: remove compiler optimization from softcore.F90 due to
compiler problems

commit 3236d34e2daa196766a9cedaf19269f7095b32c9
Merge: e6c1def 1be6dc3
Author: Daniel R. Roe <>
Date: Wed Jul 25 09:09:56 2012 -0600

    Merge branch 'amber12-with-patches' of into

commit 1be6dc30bb4eee2b586e9845aa4122f99041956a

Any ideas what Im doing wrong?


Dr. Thomas Steinbrecher
formerly at the
BioMaps Institute
Rutgers University
610 Taylor Rd.
Piscataway, NJ 08854

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Received on Wed Jul 25 2012 - 10:00:02 PDT
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