On Tue, Jan 24, 2012 at 4:18 PM, David A Case <case.biomaps.rutgers.edu>wrote:
> On Tue, Jan 24, 2012, Jason Swails wrote:
>
> > To add on -- the command appears to just be using yacc, not
> ^^^^^^^^^^^^^
> > $AMBERHOME/bin/yacc.
>
> ????which command? Let's fix this, not rely on anybody's PATH variable.
>
I was talking about the command failure in Robin's case:
bin/sh: yacc: command not found
I think if it was really using $(BINDIR)/yacc, we would have seen something
like
bin/sh: /path/to/amber/bin/yacc: command not found
The config.h file should set YACC to $(BINDIR)/yacc, and all references
> should
> use $(YACC), not "yacc" or anything else. I don't see myself where the
> error
> is coming from, but it should be simple enough to track down on a system
> where one is getting failures.
>
> > I'm also pretty sure that the system yacc (or bison) will be used before
> > the Amber yacc if it's present.
>
> No,no,no,no. (+ 996 more). The amber build should be entirely independent
> of whether or not there is a system yacc, or byacc and bison, or whatever.
> Don't even think of trying to use anything but the yacc in $AMBERHOME/bin.
>
I'm not disagreeing about what _should_ happen here, I'm only stating what
I _think_ is happening based on evidence from the past.
As I say, I can't find the problem: the "parallel" target in
> $AMBERHOME/AmberTools/src/Makefile builds yacc before building nab; and the
> $AMBERHOME/AmberTools/src/nab/Makefile uses $(YACC) (not some generic
> "yacc").
> So, we need the real details of exactly what the failure mode is.
>
Is the problem occurring in the current checkout? Should the yacc install
be done before the sff install in parallel? Perhaps it's because sff_mpi
is done before yacc in the parallel rule?
All the best,
Jason
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Tue Jan 24 2012 - 15:00:02 PST
