Jason,
thanks for your quickly answer, and yeah I hope with the newest version
of amber it corrects relocation issues and so. Quick question, by
disabling python the only impact will be the usage of MMPBSA?
Regards,
-Hugo
On 01/11/2012 10:09 AM, Jason Swails wrote:
> Can you try building with the "-nopython" flag to configure? The problem
> here is that Amber 11 and AmberTools 1.5 is not easily relocatable.
> Wherever this RPM goes, though, a standard Python (that is the same 2.x
> version for each machine) is needed.
>
> I would also suggest building it in something like /usr/local or some other
> standard location that will exist on every machine.
>
> I've never tried this, though, so I can't speak for sure. Hopefully Amber
> 12 will be better in this regard...
>
> HTH,
> Jason
>
> On Wed, Jan 11, 2012 at 9:58 AM, Hugo R Hernandez-Mora<
> hernandezhr.mail.nih.gov> wrote:
>
>> Hello there,
>> I have been trying to build a rpm file for Amber 11 and AmberTools 1.5. I
>> successfully compiled the package but I want to create the rpm to easily
>> deploy it into others servers. We are running Scientific Linux 6.1 as
>> well as CentOS 5.6. Attached is a copy of my spec file. After running
>> the rpmbuild command the rpm file is created successfully but I get an
>> error message about missing python binaries as well as perl(ForkManager).
>> Any thoughts?
>>
>> Thanks,
>> -Hugo
>>
>> -bash-4.1$ sudo rpm -ivh RPMS/x86_64/amber-11.1.5-0.**el6.x86_64.rpm
>> error: Failed dependencies:
>> /home/hugo/redhat/BUILD/amber-**11.1.5/bin/python is needed
>> by amber-11.1.5-0.el6.x86_64
>> /home/hugo/redhat/BUILD/amber-**11.1.5/bin/python2.6 is
>> needed by amber-11.1.5-0.el6.x86_64
>> /usr/local/bin/python is needed by amber-11.1.5-0.el6.x86_64
>> perl(ForkManager) is needed by amber-11.1.5-0.el6.x86_64
>>
>>
>> _______________________________________________
>> AMBER-Developers mailing list
>> AMBER-Developers.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber-developers
>>
>>
>
--
*Hugo Hernandez-Mora
Linux Administrator*
NIH/NHGRI/NCTT Contractor
9800 Medical Center Dr, Suite 3005
Rockville, MD 20850
Tel: 301-217-2581
Cel: 240-506-7982
"Se seus esforços foram vistos com indeferença, não desanime que o sol
faze um espectacolo maravilhoso todas as manhãs enquanto a maioria das
pessoas ainda estão dormindo"
- Anónimo brasileiro
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Received on Wed Jan 11 2012 - 08:30:03 PST
