Hi Mengjuei,
Agreed, the definition is not correct. It should be Omega 1 / 2 rather than
Phi/Psi maybe? Have the student look up what the angle used in the tutorial
is and then they can update the labeling.
All the best
Ross
> -----Original Message-----
> From: MengJuei Hsieh [mailto:mengjueh.uci.edu]
> Sent: Friday, July 22, 2011 1:48 PM
> To: AMBER Developers Mailing List
> Subject: [AMBER-Developers] Phi/psi angle assignment in tutorial B5
>
> Hi,
>
> Another question from an undergrad in our lab, the phi psi angle
> assignment
> in http://ambermd.org/tutorials/basic/tutorial5/ seems to be weird.
> Isn't
> this to be phi_2?
> dihedral phi_1 :1.C :2.N :2.CA :2.C out phi_1
>
> Best,
> --
> Mengjuei Hsieh, Molecular Biology & Biochem, Univ. of California
> Irvine.
>
>
>
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Received on Fri Jul 22 2011 - 17:00:08 PDT
