Re: [AMBER-Developers] Intel AT/Automake issue

From: B. Lachele Foley <lfoley.uga.edu>
Date: Wed, 1 Jun 2011 15:35:46 +0000

UNCLEAN!!! WE ARE UNCLEAN!!! :-) I think I found the problem by accident. Installation log files from 2 and 3 below are attached in case they might be useful. For some reason, "./configure intel ; make clean ; ./configure intel" fixes the problem. Details that correspond to the attached logs: Trying in: /programs/amber.git2 (this also happens with a patched official download of AT1.5) 1. copy over clean git repo (no bin dirs made, etc.) 2. set AMBERHOME and PATH 3. ./configure intel 4. wc fftw-2.1.5/Makefile 576 2304 18963 fftw-2.1.5/Makefile 5. cd fftw-2.1.5/ ; cp Makefile Makefile.save ; cd .. 6. make install | tee install2.log [blah blah blah] 7. die with automake fftw complaint 8. diff fftw-2.1.5/Makefile.save fftw-2.1.5/Makefile (none) Try in: /programs/amber.git3 1. copy over clean git repo (no bin dirs made, etc.) 2. set AMBERHOME and PATH 3. ./configure intel 4. make clean 5. ./configure intel 6. make install | tee install2.log [blah blah blah] 7. "Installation of AmberTools, version 1.5 serial is complete at Wed Jun 1 16:02:32 IST 2011." :-) Lachele Dr. B. Lachele Foley Complex Carbohydrate Research Center The University of Georgia Athens, GA USA lfoley.uga.edu http://glycam.ccrc.uga.edu ________________________________________ From: David A Case [case@biomaps.rutgers.edu] Sent: Wednesday, June 01, 2011 8:31 AM To: AMBER Developers Mailing List Subject: Re: [AMBER-Developers] Intel AT/Automake issue On Tue, May 31, 2011, B. Lachele Foley wrote: > > > Lachele: can you post the *entire* log file involving fftw-2.1.5, i.e. > > not just the immediate context? > > Done. Is there a log from the install somewhere? I can run it again > and send more context. I was surprised to see "automake" in the middle > of it. What you sent was the fftw configure log, which looks fine. To get the real configure log type something like this: make install | tee install.log Before doing this (but after running configure) you might check to see if the file $AMBERHOME/AmberTools/src/fftw-2.1.5/thread/Makefile exists (and is non-empty). ...thx...dac _______________________________________________ AMBER-Developers mailing list AMBER-Developers@ambermd.org http://lists.ambermd.org/mailman/listinfo/amber-developers

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Received on Wed Jun 01 2011 - 09:00:04 PDT
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