UNCLEAN!!! WE ARE UNCLEAN!!!
:-)
I think I found the problem by accident. Installation log files from 2 and 3 below are attached in case they might be useful. For some reason, "./configure intel ; make clean ; ./configure intel" fixes the problem.
Details that correspond to the attached logs:
Trying in: /programs/amber.git2
(this also happens with a patched official download of AT1.5)
1. copy over clean git repo (no bin dirs made, etc.)
2. set AMBERHOME and PATH
3. ./configure intel
4. wc fftw-2.1.5/Makefile
576 2304 18963 fftw-2.1.5/Makefile
5. cd fftw-2.1.5/ ; cp Makefile Makefile.save ; cd ..
6. make install | tee install2.log
[blah blah blah]
7. die with automake fftw complaint
8. diff fftw-2.1.5/Makefile.save fftw-2.1.5/Makefile (none)
Try in: /programs/amber.git3
1. copy over clean git repo (no bin dirs made, etc.)
2. set AMBERHOME and PATH
3. ./configure intel
4. make clean
5. ./configure intel
6. make install | tee install2.log
[blah blah blah]
7. "Installation of AmberTools, version 1.5 serial is complete at Wed Jun 1 16:02:32 IST 2011."
:-) Lachele
Dr. B. Lachele Foley
Complex Carbohydrate Research Center
The University of Georgia
Athens, GA USA
lfoley.uga.edu
http://glycam.ccrc.uga.edu
________________________________________
From: David A Case [case.biomaps.rutgers.edu]
Sent: Wednesday, June 01, 2011 8:31 AM
To: AMBER Developers Mailing List
Subject: Re: [AMBER-Developers] Intel AT/Automake issue
On Tue, May 31, 2011, B. Lachele Foley wrote:
>
> > Lachele: can you post the *entire* log file involving fftw-2.1.5, i.e.
> > not just the immediate context?
>
> Done. Is there a log from the install somewhere? I can run it again
> and send more context. I was surprised to see "automake" in the middle
> of it.
What you sent was the fftw configure log, which looks fine. To get the real
configure log type something like this:
make install | tee install.log
Before doing this (but after running configure) you might check to see if the
file $AMBERHOME/AmberTools/src/fftw-2.1.5/thread/Makefile exists (and is
non-empty).
...thx...dac
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Received on Wed Jun 01 2011 - 09:00:04 PDT
