Hi Jason,
I have tried to compile this version of ambertools with pgi, but it failed
to compile python module since "-Xlinker and -export-dynamic" can not be
recognized by pgcc. Not sure whether you got similar error.
pgcc -Xlinker -export-dynamic -o python \
Modules/python.o \
libpython2.6.a -lpthread -ldl -lpthread -lutil
-lm
pgcc-Error-Unknown switch: -Xlinker
pgcc-Error-Unknown switch: -export-dynamic
make[1]: *** [python] Error 1
Best Regards,
Lin
2011/3/14 Jason Swails <jason.swails.gmail.com>
> If anyone has access to the PGI compilers, bits of AmberTools aren't
> compiling for me out-of-the-box on athena, but there are enough
> Cray-specific idiosyncrasies that I'm not confident enough to label them
> PGI
> problems.
>
> Also, for those of you who will try building this alongside Amber11 (dirty
> or clean), don't forget to apply the script AT15_Amber11.py after configure
> (from any directory, it just uses absolute paths based on AMBERHOME).
> Configure should print a warning message about this in any case.
>
> All the best,
> Jason
>
> On Mon, Mar 14, 2011 at 12:03 PM, David A Case <case.biomaps.rutgers.edu
> >wrote:
>
> > Hi everyone:
> >
> > The second "release candidate" for AmberTools 1.5 is here:
> >
> > http://ambermd.org/downloads/AmberTools.14mar11.tar.bz2
> >
> > Please test this out:
> >
> > a. on its own
> > b. in conjunction with Amber11 (either in a clean install, or untarred
> > on top of a working, "dirty" directory already containing AT 1.4.)
> >
> > It is better to test this than the at15-with-patches branch, since this
> is
> > what users would actually be getting. No GEM here yet, but other things
> > should be getting close.
> >
> > ...thx...dac
> >
> >
> > _______________________________________________
> > AMBER-Developers mailing list
> > AMBER-Developers.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber-developers
> >
>
>
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Candidate
> 352-392-4032
> _______________________________________________
> AMBER-Developers mailing list
> AMBER-Developers.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber-developers
>
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Received on Tue Mar 15 2011 - 17:00:02 PDT
