After more digging here I think I know what happened - the intel v12
compilers choked during compilation, so modules weren't built right.
Long story short, this didn't occur when I compiled with gnu, so looks
like there is no issue. Sorry for the false alarm.
I don't know if it's my computer here or what but I have come across a
lot of issues with the intel v12.
-Dan
On Fri, Feb 25, 2011 at 6:19 PM, Jason Swails <jason.swails.gmail.com> wrote:
> Hi Dan,
>
> Python should build all of the standard libraries in
> $AMBERHOME/lib/python2.6 (for mac it's in a framework directory) that "make
> clean" shouldn't (and doesn't, on my systems) blow away. The stdlib is
> still intact, I think. Looking at the Makefile in the Python source
> directory, it looks like the only thing that happens is in the . directory.
>
> The reason behind the test is that Python take a while to build and it'd be
> nice to avoid doing that if it's already there. Can you list some of the
> systems that you saw this behavior with? I don't see it on Mac or Ubuntu
> Linux.
>
> Thanks!
> Jason
>
> On Fri, Feb 25, 2011 at 6:06 PM, Daniel Roe <daniel.r.roe.gmail.com> wrote:
>
>> Hi All,
>>
>> I've been testing out Amber with a bunch of compilers and have come
>> across a small issue. The configure script will not call for the
>> bundled python to be built if "../../bin/python" exists. Since "make
>> clean" doesn't get rid of '../../bin/python' but does clean the python
>> directory I think what happens is that all of the python modules get
>> blown away and don't get rebuilt (thus causing re-compilations to
>> fail). So I think either 'make clean' should remove the python binary,
>> or if the intention was to not have to rebuild python all the time
>> configure should test whether the necessary modules can be imported
>> instead of whether ../../bin/python exists.
>>
>> -Dan
>>
>> _______________________________________________
>> AMBER-Developers mailing list
>> AMBER-Developers.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber-developers
>>
>
>
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Candidate
> 352-392-4032
> _______________________________________________
> AMBER-Developers mailing list
> AMBER-Developers.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber-developers
>
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Received on Fri Feb 25 2011 - 17:30:03 PST
